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Cluster: Rep_960_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_960_c_86 Rep_960_c_86_1 410 1792 + 2.A.2.3.4
CAZyme Rep_960_c_86 Rep_960_c_86_2 1804 4122 + GH31_3
TC Rep_960_c_86 Rep_960_c_86_3 4119 5294 - 2.A.1.7.11
TF Rep_960_c_86 Rep_960_c_86_4 5392 6150 + HTH_6
CAZyme Rep_960_c_86 Rep_960_c_86_5 6134 7513 - GH4
TC Rep_960_c_86 Rep_960_c_86_6 7526 9088 - 4.A.1.1.8
pfam Rep_960_c_86 Rep_960_c_86_7 9284 11017 - AsmA
TC Rep_960_c_86 Rep_960_c_86_8 11139 12530 - 2.A.40.4.2
TC Rep_960_c_86 Rep_960_c_86_9 12761 13966 + 2.A.27.1.1
Gene ID: Rep_960_c_86_1
Type: TC
Location: 410 - 1792 (+)
Gene ID: Rep_960_c_86_2
Type: CAZyme
Location: 1804 - 4122 (+)
Gene ID: Rep_960_c_86_3
Type: TC
Location: 4119 - 5294 (-)
Gene ID: Rep_960_c_86_4
Type: TF
Location: 5392 - 6150 (+)
Gene ID: Rep_960_c_86_5
Type: CAZyme
Location: 6134 - 7513 (-)
Gene ID: Rep_960_c_86_6
Type: TC
Location: 7526 - 9088 (-)
Gene ID: Rep_960_c_86_7
Type: pfam
Location: 9284 - 11017 (-)
Gene ID: Rep_960_c_86_8
Type: TC
Location: 11139 - 12530 (-)
Gene ID: Rep_960_c_86_9
Type: TC
Location: 12761 - 13966 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_960_c_86_2 vegetarian > omnivore 1.50746 0.04709

🧭 Explore Read Mapping of CGC

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