Cluster: Rep_960_CGC22
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_960
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_960_c_84 | Rep_960_c_84_21 | 22343 | 23680 | - | 2.A.8.1.5 |
| TF | Rep_960_c_84 | Rep_960_c_84_22 | 23911 | 24867 | + | HTH_1 |
| CAZyme | Rep_960_c_84 | Rep_960_c_84_23 | 24922 | 25971 | + | GH5 |
| TC | Rep_960_c_84 | Rep_960_c_84_24 | 25898 | 27082 | - | 2.A.1.2.9 |
| TC | Rep_960_c_84 | Rep_960_c_84_25 | 27262 | 28095 | - | 2.A.7.31.3 |
Gene ID: Rep_960_c_84_21
Type: TC
Location: 22343 - 23680 (-)
Type: TC
Location: 22343 - 23680 (-)
Gene ID: Rep_960_c_84_22
Type: TF
Location: 23911 - 24867 (+)
Type: TF
Location: 23911 - 24867 (+)
Gene ID: Rep_960_c_84_23
Type: CAZyme
Location: 24922 - 25971 (+)
Type: CAZyme
Location: 24922 - 25971 (+)
Gene ID: Rep_960_c_84_24
Type: TC
Location: 25898 - 27082 (-)
Type: TC
Location: 25898 - 27082 (-)
Gene ID: Rep_960_c_84_25
Type: TC
Location: 27262 - 28095 (-)
Type: TC
Location: 27262 - 28095 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_A
Species
Citrobacter_A amalonaticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.