Cluster: Rep_960_CGC20
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_960
- CGC Family ID: CGCFAM_00785
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_960_c_78 | Rep_960_c_78_65 | 64156 | 65865 | + | GH13_18 |
| TC | Rep_960_c_78 | Rep_960_c_78_66 | 65879 | 66943 | + | 3.A.1.1.46 |
| CAZyme | Rep_960_c_78 | Rep_960_c_78_67 | 66888 | 69164 | + | GH65 |
| pfam | Rep_960_c_78 | Rep_960_c_78_68 | 69161 | 69823 | + | Hydrolase | HAD_2 |
| TC | Rep_960_c_78 | Rep_960_c_78_69 | 69834 | 70913 | + | 3.A.1.1.46 |
| TC | Rep_960_c_78 | Rep_960_c_78_70 | 70990 | 71895 | + | 1.B.21.1.1 |
Gene ID: Rep_960_c_78_65
Type: CAZyme
Location: 64156 - 65865 (+)
Type: CAZyme
Location: 64156 - 65865 (+)
Gene ID: Rep_960_c_78_66
Type: TC
Location: 65879 - 66943 (+)
Type: TC
Location: 65879 - 66943 (+)
Gene ID: Rep_960_c_78_67
Type: CAZyme
Location: 66888 - 69164 (+)
Type: CAZyme
Location: 66888 - 69164 (+)
Gene ID: Rep_960_c_78_68
Type: pfam
Location: 69161 - 69823 (+)
Type: pfam
Location: 69161 - 69823 (+)
Gene ID: Rep_960_c_78_69
Type: TC
Location: 69834 - 70913 (+)
Type: TC
Location: 69834 - 70913 (+)
Gene ID: Rep_960_c_78_70
Type: TC
Location: 70990 - 71895 (+)
Type: TC
Location: 70990 - 71895 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_A
Species
Citrobacter_A amalonaticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.