Cluster: Rep_960_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_960
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_960_c_5 | Rep_960_c_5_2 | 1261 | 2628 | - | 2.A.2.3.4 |
| TF | Rep_960_c_5 | Rep_960_c_5_3 | 2833 | 5538 | - | GerE |
| CAZyme | Rep_960_c_5 | Rep_960_c_5_4 | 6159 | 8549 | + | GT35 |
| CAZyme | Rep_960_c_5 | Rep_960_c_5_5 | 8559 | 10643 | + | GH77 |
| TC | Rep_960_c_5 | Rep_960_c_5_6 | 10814 | 12130 | - | 2.A.8.1.4 |
Gene ID: Rep_960_c_5_2
Type: TC
Location: 1261 - 2628 (-)
Type: TC
Location: 1261 - 2628 (-)
Gene ID: Rep_960_c_5_3
Type: TF
Location: 2833 - 5538 (-)
Type: TF
Location: 2833 - 5538 (-)
Gene ID: Rep_960_c_5_4
Type: CAZyme
Location: 6159 - 8549 (+)
Type: CAZyme
Location: 6159 - 8549 (+)
Gene ID: Rep_960_c_5_5
Type: CAZyme
Location: 8559 - 10643 (+)
Type: CAZyme
Location: 8559 - 10643 (+)
Gene ID: Rep_960_c_5_6
Type: TC
Location: 10814 - 12130 (-)
Type: TC
Location: 10814 - 12130 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_A
Species
Citrobacter_A amalonaticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_960_c_5_4 | vegetarian > omnivore | 1.04482 | 0.02695 |