Cluster: Rep_960_CGC19
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_960
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_960_c_77 | Rep_960_c_77_50 | 53242 | 54528 | - | 2.A.56.1.5 |
| pfam | Rep_960_c_77 | Rep_960_c_77_51 | 54559 | 55068 | - | DctQ |
| TC | Rep_960_c_77 | Rep_960_c_77_52 | 55130 | 56107 | - | 2.A.56.1.9 |
| TC | Rep_960_c_77 | Rep_960_c_77_53 | 56464 | 59172 | - | 3.A.3.4.1 |
| TF | Rep_960_c_77 | Rep_960_c_77_54 | 59639 | 60586 | + | LacI |
| TC | Rep_960_c_77 | Rep_960_c_77_55 | 60731 | 62149 | + | 4.A.1.2.4 |
| CAZyme | Rep_960_c_77 | Rep_960_c_77_56 | 62197 | 63855 | + | GH13_29 |
Gene ID: Rep_960_c_77_50
Type: TC
Location: 53242 - 54528 (-)
Type: TC
Location: 53242 - 54528 (-)
Gene ID: Rep_960_c_77_51
Type: pfam
Location: 54559 - 55068 (-)
Type: pfam
Location: 54559 - 55068 (-)
Gene ID: Rep_960_c_77_52
Type: TC
Location: 55130 - 56107 (-)
Type: TC
Location: 55130 - 56107 (-)
Gene ID: Rep_960_c_77_53
Type: TC
Location: 56464 - 59172 (-)
Type: TC
Location: 56464 - 59172 (-)
Gene ID: Rep_960_c_77_54
Type: TF
Location: 59639 - 60586 (+)
Type: TF
Location: 59639 - 60586 (+)
Gene ID: Rep_960_c_77_55
Type: TC
Location: 60731 - 62149 (+)
Type: TC
Location: 60731 - 62149 (+)
Gene ID: Rep_960_c_77_56
Type: CAZyme
Location: 62197 - 63855 (+)
Type: CAZyme
Location: 62197 - 63855 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_A
Species
Citrobacter_A amalonaticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.