Cluster: Rep_960_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_960
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_960_c_75 | Rep_960_c_75_10 | 7637 | 9574 | - | GH23 |
| TC | Rep_960_c_75 | Rep_960_c_75_11 | 9912 | 11579 | + | 3.A.1.120.6 |
| pfam | Rep_960_c_75 | Rep_960_c_75_12 | 11668 | 12411 | - | SIMPL |
| TC | Rep_960_c_75 | Rep_960_c_75_13 | 12527 | 13162 | - | 2.A.75.1.2 |
| TC | Rep_960_c_75 | Rep_960_c_75_14 | 13307 | 14167 | - | 1.A.23.2.1 |
Gene ID: Rep_960_c_75_10
Type: CAZyme
Location: 7637 - 9574 (-)
Type: CAZyme
Location: 7637 - 9574 (-)
Gene ID: Rep_960_c_75_11
Type: TC
Location: 9912 - 11579 (+)
Type: TC
Location: 9912 - 11579 (+)
Gene ID: Rep_960_c_75_12
Type: pfam
Location: 11668 - 12411 (-)
Type: pfam
Location: 11668 - 12411 (-)
Gene ID: Rep_960_c_75_13
Type: TC
Location: 12527 - 13162 (-)
Type: TC
Location: 12527 - 13162 (-)
Gene ID: Rep_960_c_75_14
Type: TC
Location: 13307 - 14167 (-)
Type: TC
Location: 13307 - 14167 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_A
Species
Citrobacter_A amalonaticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.