Cluster: Rep_960_CGC15
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_960
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_960_c_49 | Rep_960_c_49_33 | 28810 | 30501 | + | GT2 |
| pfam | Rep_960_c_49 | Rep_960_c_49_34 | 30505 | 30927 | + | 4HBT | 4HBT_2 |
| pfam | Rep_960_c_49 | Rep_960_c_49_35 | 30924 | 31529 | + | LolA | LolA_3 |
| TC | Rep_960_c_49 | Rep_960_c_49_36 | 31564 | 33816 | + | 2.A.6.8.2 |
Gene ID: Rep_960_c_49_33
Type: CAZyme
Location: 28810 - 30501 (+)
Type: CAZyme
Location: 28810 - 30501 (+)
Gene ID: Rep_960_c_49_34
Type: pfam
Location: 30505 - 30927 (+)
Type: pfam
Location: 30505 - 30927 (+)
Gene ID: Rep_960_c_49_35
Type: pfam
Location: 30924 - 31529 (+)
Type: pfam
Location: 30924 - 31529 (+)
Gene ID: Rep_960_c_49_36
Type: TC
Location: 31564 - 33816 (+)
Type: TC
Location: 31564 - 33816 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_A
Species
Citrobacter_A amalonaticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.