Cluster: Rep_960_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_960
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_960_c_33 | Rep_960_c_33_20 | 17067 | 17453 | - | 2.A.7.22.1 |
| TC | Rep_960_c_33 | Rep_960_c_33_21 | 17453 | 17788 | - | 2.A.7.22.2 |
| CAZyme | Rep_960_c_33 | Rep_960_c_33_22 | 17785 | 19440 | - | GT83 |
| pfam | Rep_960_c_33 | Rep_960_c_33_23 | 19437 | 20339 | - | Polysacc_deac_1 |
| pfam | Rep_960_c_33 | Rep_960_c_33_24 | 20336 | 22318 | - | Formyl_trans_N | 3Beta_HSD | Epimerase | Formyl_trans_C | GDP_Man_Dehyd |
| CAZyme | Rep_960_c_33 | Rep_960_c_33_25 | 22318 | 23298 | - | GT2 |
Gene ID: Rep_960_c_33_20
Type: TC
Location: 17067 - 17453 (-)
Type: TC
Location: 17067 - 17453 (-)
Gene ID: Rep_960_c_33_21
Type: TC
Location: 17453 - 17788 (-)
Type: TC
Location: 17453 - 17788 (-)
Gene ID: Rep_960_c_33_22
Type: CAZyme
Location: 17785 - 19440 (-)
Type: CAZyme
Location: 17785 - 19440 (-)
Gene ID: Rep_960_c_33_23
Type: pfam
Location: 19437 - 20339 (-)
Type: pfam
Location: 19437 - 20339 (-)
Gene ID: Rep_960_c_33_24
Type: pfam
Location: 20336 - 22318 (-)
Type: pfam
Location: 20336 - 22318 (-)
Gene ID: Rep_960_c_33_25
Type: CAZyme
Location: 22318 - 23298 (-)
Type: CAZyme
Location: 22318 - 23298 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_A
Species
Citrobacter_A amalonaticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.