Cluster: Rep_960_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_960
- CGC Family ID: CGCFAM_02775
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_960_c_24 | Rep_960_c_24_71 | 79884 | 80621 | + | CBM50 |
| TF | Rep_960_c_24 | Rep_960_c_24_72 | 80982 | 81335 | + | HTH_5 |
| STP | Rep_960_c_24 | Rep_960_c_24_73 | 81383 | 81745 | + | ArsD |
| TC | Rep_960_c_24 | Rep_960_c_24_74 | 81763 | 82332 | + | 3.A.4.1.1 |
Gene ID: Rep_960_c_24_71
Type: CAZyme
Location: 79884 - 80621 (+)
Type: CAZyme
Location: 79884 - 80621 (+)
Gene ID: Rep_960_c_24_72
Type: TF
Location: 80982 - 81335 (+)
Type: TF
Location: 80982 - 81335 (+)
Gene ID: Rep_960_c_24_73
Type: STP
Location: 81383 - 81745 (+)
Type: STP
Location: 81383 - 81745 (+)
Gene ID: Rep_960_c_24_74
Type: TC
Location: 81763 - 82332 (+)
Type: TC
Location: 81763 - 82332 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Citrobacter_A
Species
Citrobacter_A amalonaticus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.