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Cluster: Rep_960_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_960_c_2 Rep_960_c_2_6 3784 4080 - 3.A.1.27.3
TC Rep_960_c_2 Rep_960_c_2_7 4080 4715 - 3.A.1.27.3
TC Rep_960_c_2 Rep_960_c_2_8 4734 5291 - 3.A.1.27.3
TC Rep_960_c_2 Rep_960_c_2_9 5296 6078 - 3.A.1.27.3
TC Rep_960_c_2 Rep_960_c_2_10 6086 6898 - 3.A.1.27.3
TC Rep_960_c_2 Rep_960_c_2_11 7107 8084 + 2.A.19.5.1
STP Rep_960_c_2 Rep_960_c_2_12 8099 9085 + CBS | CBS | SIS
pfam Rep_960_c_2 Rep_960_c_2_13 9106 9672 + Hydrolase_3
TC Rep_960_c_2 Rep_960_c_2_14 9669 10244 + 1.B.42.1.2
TC Rep_960_c_2 Rep_960_c_2_15 10213 10767 + 1.B.42.1.2
TC Rep_960_c_2 Rep_960_c_2_16 10774 11499 + 1.B.42.1.2
pfam Rep_960_c_2 Rep_960_c_2_17 11547 12980 + Sigma54_AID | Sigma54_DBD | Sigma54_CBD
pfam Rep_960_c_2 Rep_960_c_2_18 13003 13290 + Ribosomal_S30AE
TC Rep_960_c_2 Rep_960_c_2_19 13406 13897 + 4.A.2.1.7
pfam Rep_960_c_2 Rep_960_c_2_20 13931 14785 + RapZ-like_N | PapZ_C
TC Rep_960_c_2 Rep_960_c_2_21 14782 15054 + 8.A.8.1.5
STP Rep_960_c_2 Rep_960_c_2_22 15255 15887 + Pkinase
CAZyme Rep_960_c_2 Rep_960_c_2_23 15895 16614 - GT51
Gene ID: Rep_960_c_2_6
Type: TC
Location: 3784 - 4080 (-)
Gene ID: Rep_960_c_2_7
Type: TC
Location: 4080 - 4715 (-)
Gene ID: Rep_960_c_2_8
Type: TC
Location: 4734 - 5291 (-)
Gene ID: Rep_960_c_2_9
Type: TC
Location: 5296 - 6078 (-)
Gene ID: Rep_960_c_2_10
Type: TC
Location: 6086 - 6898 (-)
Gene ID: Rep_960_c_2_11
Type: TC
Location: 7107 - 8084 (+)
Gene ID: Rep_960_c_2_12
Type: STP
Location: 8099 - 9085 (+)
Gene ID: Rep_960_c_2_13
Type: pfam
Location: 9106 - 9672 (+)
Gene ID: Rep_960_c_2_14
Type: TC
Location: 9669 - 10244 (+)
Gene ID: Rep_960_c_2_15
Type: TC
Location: 10213 - 10767 (+)
Gene ID: Rep_960_c_2_16
Type: TC
Location: 10774 - 11499 (+)
Gene ID: Rep_960_c_2_17
Type: pfam
Location: 11547 - 12980 (+)
Gene ID: Rep_960_c_2_18
Type: pfam
Location: 13003 - 13290 (+)
Gene ID: Rep_960_c_2_19
Type: TC
Location: 13406 - 13897 (+)
Gene ID: Rep_960_c_2_20
Type: pfam
Location: 13931 - 14785 (+)
Gene ID: Rep_960_c_2_21
Type: TC
Location: 14782 - 15054 (+)
Gene ID: Rep_960_c_2_22
Type: STP
Location: 15255 - 15887 (+)
Gene ID: Rep_960_c_2_23
Type: CAZyme
Location: 15895 - 16614 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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