Cluster: Rep_958_CGC34
🧬 Cluster Details
- Gene Count: 25
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_958
- CGC Family ID: CGCFAM_04913
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_958_c_128 | Rep_958_c_128_13 | 14772 | 15920 | + | 8.A.4.1.1 |
| TC | Rep_958_c_128 | Rep_958_c_128_14 | 15944 | 17620 | + | 1.B.18.1.2 |
| pfam | Rep_958_c_128 | Rep_958_c_128_15 | 17630 | 18370 | + | CTP_transf_3 | NTP_transf_3 |
| CAZyme | Rep_958_c_128 | Rep_958_c_128_16 | 18367 | 20394 | + | GT107 | GT107 |
| TC | Rep_958_c_128 | Rep_958_c_128_17 | 20429 | 21619 | + | 9.A.41.1.3 |
| CAZyme | Rep_958_c_128 | Rep_958_c_128_18 | 21794 | 23260 | - | GT2 |
| pfam | Rep_958_c_128 | Rep_958_c_128_19 | 23263 | 24432 | - | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | Rep_958_c_128 | Rep_958_c_128_20 | 24592 | 26661 | - | GT2 | GT2 |
| NULL(UNKNOWN) | Rep_958_c_128 | Rep_958_c_128_21 | 27068 | 28837 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_958_c_128 | Rep_958_c_128_22 | 28882 | 29907 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | KR | GDP_Man_Dehyd |
| TC | Rep_958_c_128 | Rep_958_c_128_23 | 29928 | 30596 | - | 3.A.1.101.1 |
| TC | Rep_958_c_128 | Rep_958_c_128_24 | 30593 | 31369 | - | 3.A.1.101.1 |
| TC | Rep_958_c_128 | Rep_958_c_128_25 | 32515 | 33051 | - | 3.A.15.3.1 |
| pfam | Rep_958_c_128 | Rep_958_c_128_26 | 33053 | 34231 | - | T2SSL | GspL_C |
| TC | Rep_958_c_128 | Rep_958_c_128_27 | 34228 | 35205 | - | 3.A.15.1.1 |
| TC | Rep_958_c_128 | Rep_958_c_128_28 | 35202 | 35807 | - | 3.A.15.1.1 |
| TC | Rep_958_c_128 | Rep_958_c_128_29 | 35804 | 36175 | - | 3.A.15.3.1 |
| pfam | Rep_958_c_128 | Rep_958_c_128_30 | 36172 | 36735 | - | GspH |
| TC | Rep_958_c_128 | Rep_958_c_128_31 | 36739 | 37194 | - | 3.A.15.1.1 |
| TC | Rep_958_c_128 | Rep_958_c_128_32 | 37211 | 38434 | - | 3.A.15.1.1 |
| TC | Rep_958_c_128 | Rep_958_c_128_33 | 38434 | 39927 | - | 3.A.15.1.1 |
| TC | Rep_958_c_128 | Rep_958_c_128_34 | 39927 | 41987 | - | 1.B.22.1.1 |
| pfam | Rep_958_c_128 | Rep_958_c_128_35 | 42017 | 42847 | - | T2SSC |
| pfam | Rep_958_c_128 | Rep_958_c_128_36 | 42992 | 43402 | - | T2SSS_2 |
| TC | Rep_958_c_128 | Rep_958_c_128_37 | 43468 | 44277 | - | 3.A.15.2.1 |
Gene ID: Rep_958_c_128_13
Type: TC
Location: 14772 - 15920 (+)
Type: TC
Location: 14772 - 15920 (+)
Gene ID: Rep_958_c_128_14
Type: TC
Location: 15944 - 17620 (+)
Type: TC
Location: 15944 - 17620 (+)
Gene ID: Rep_958_c_128_15
Type: pfam
Location: 17630 - 18370 (+)
Type: pfam
Location: 17630 - 18370 (+)
Gene ID: Rep_958_c_128_16
Type: CAZyme
Location: 18367 - 20394 (+)
Type: CAZyme
Location: 18367 - 20394 (+)
Gene ID: Rep_958_c_128_17
Type: TC
Location: 20429 - 21619 (+)
Type: TC
Location: 20429 - 21619 (+)
Gene ID: Rep_958_c_128_18
Type: CAZyme
Location: 21794 - 23260 (-)
Type: CAZyme
Location: 21794 - 23260 (-)
Gene ID: Rep_958_c_128_19
Type: pfam
Location: 23263 - 24432 (-)
Type: pfam
Location: 23263 - 24432 (-)
Gene ID: Rep_958_c_128_20
Type: CAZyme
Location: 24592 - 26661 (-)
Type: CAZyme
Location: 24592 - 26661 (-)
Gene ID: Rep_958_c_128_21
Type:
Location: 27068 - 28837 (-)
Type:
Location: 27068 - 28837 (-)
Gene ID: Rep_958_c_128_22
Type: pfam
Location: 28882 - 29907 (-)
Type: pfam
Location: 28882 - 29907 (-)
Gene ID: Rep_958_c_128_23
Type: TC
Location: 29928 - 30596 (-)
Type: TC
Location: 29928 - 30596 (-)
Gene ID: Rep_958_c_128_24
Type: TC
Location: 30593 - 31369 (-)
Type: TC
Location: 30593 - 31369 (-)
Gene ID: Rep_958_c_128_25
Type: TC
Location: 32515 - 33051 (-)
Type: TC
Location: 32515 - 33051 (-)
Gene ID: Rep_958_c_128_26
Type: pfam
Location: 33053 - 34231 (-)
Type: pfam
Location: 33053 - 34231 (-)
Gene ID: Rep_958_c_128_27
Type: TC
Location: 34228 - 35205 (-)
Type: TC
Location: 34228 - 35205 (-)
Gene ID: Rep_958_c_128_28
Type: TC
Location: 35202 - 35807 (-)
Type: TC
Location: 35202 - 35807 (-)
Gene ID: Rep_958_c_128_29
Type: TC
Location: 35804 - 36175 (-)
Type: TC
Location: 35804 - 36175 (-)
Gene ID: Rep_958_c_128_30
Type: pfam
Location: 36172 - 36735 (-)
Type: pfam
Location: 36172 - 36735 (-)
Gene ID: Rep_958_c_128_31
Type: TC
Location: 36739 - 37194 (-)
Type: TC
Location: 36739 - 37194 (-)
Gene ID: Rep_958_c_128_32
Type: TC
Location: 37211 - 38434 (-)
Type: TC
Location: 37211 - 38434 (-)
Gene ID: Rep_958_c_128_33
Type: TC
Location: 38434 - 39927 (-)
Type: TC
Location: 38434 - 39927 (-)
Gene ID: Rep_958_c_128_34
Type: TC
Location: 39927 - 41987 (-)
Type: TC
Location: 39927 - 41987 (-)
Gene ID: Rep_958_c_128_35
Type: pfam
Location: 42017 - 42847 (-)
Type: pfam
Location: 42017 - 42847 (-)
Gene ID: Rep_958_c_128_36
Type: pfam
Location: 42992 - 43402 (-)
Type: pfam
Location: 42992 - 43402 (-)
Gene ID: Rep_958_c_128_37
Type: TC
Location: 43468 - 44277 (-)
Type: TC
Location: 43468 - 44277 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia ruysiae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_958_c_128_14 | omnivore > vegetarian | 2.06158 | 0.04829 |
| Rep_958_c_128_17 | omnivore > vegetarian | 3.09718 | 0.04762 |
| Rep_958_c_128_24 | omnivore > vegetarian | 1.60418 | 0.04829 |
| Rep_958_c_128_27 | omnivore > vegetarian | 2.03144 | 0.04829 |
| Rep_958_c_128_30 | omnivore > vegetarian | 2.69273 | 0.03416 |
| Rep_958_c_128_31 | omnivore > vegetarian | 2.01270 | 0.03596 |
| Rep_958_c_128_32 | omnivore > vegetarian | 2.40857 | 0.03416 |