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Cluster: Rep_958_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_958_c_122 Rep_958_c_122_65 50768 52453 - 9.B.33.1.1
TF Rep_958_c_122 Rep_958_c_122_66 52675 53406 + MerR
NULL(UNKNOWN) Rep_958_c_122 Rep_958_c_122_67 53466 53573 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_958_c_122 Rep_958_c_122_68 53554 54285 - 3.A.1.12.15
TC Rep_958_c_122 Rep_958_c_122_69 54290 55216 - 3.A.1.12.15
TC Rep_958_c_122 Rep_958_c_122_70 55209 56366 - 3.A.1.12.15
TC Rep_958_c_122 Rep_958_c_122_71 56373 57290 - 3.A.1.12.15
CAZyme Rep_958_c_122 Rep_958_c_122_72 57565 59862 - GH3
Gene ID: Rep_958_c_122_65
Type: TC
Location: 50768 - 52453 (-)
Gene ID: Rep_958_c_122_66
Type: TF
Location: 52675 - 53406 (+)
Gene ID: Rep_958_c_122_67
Type:
Location: 53466 - 53573 (+)
Gene ID: Rep_958_c_122_68
Type: TC
Location: 53554 - 54285 (-)
Gene ID: Rep_958_c_122_69
Type: TC
Location: 54290 - 55216 (-)
Gene ID: Rep_958_c_122_70
Type: TC
Location: 55209 - 56366 (-)
Gene ID: Rep_958_c_122_71
Type: TC
Location: 56373 - 57290 (-)
Gene ID: Rep_958_c_122_72
Type: CAZyme
Location: 57565 - 59862 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_958_c_122_65 omnivore > vegetarian 1.40447 0.03596
Rep_958_c_122_66 omnivore > vegetarian 1.52563 0.03814

🧭 Explore Read Mapping of CGC

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