Cluster: Rep_958_CGC28
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_958
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_958_c_120 | Rep_958_c_120_3 | 2104 | 3252 | - | CE9 |
| pfam | Rep_958_c_120 | Rep_958_c_120_4 | 3314 | 4114 | - | Glucosamine_iso |
| TC | Rep_958_c_120 | Rep_958_c_120_5 | 4447 | 6393 | + | 4.A.1.1.2 |
| pfam | Rep_958_c_120 | Rep_958_c_120_6 | 6661 | 8325 | + | tRNA-synt_1c | tRNA-synt_1c_C | tRNA-synt_1c_C2 |
| TC | Rep_958_c_120 | Rep_958_c_120_7 | 8902 | 10308 | + | 1.B.25.1.13 |
Gene ID: Rep_958_c_120_3
Type: CAZyme
Location: 2104 - 3252 (-)
Type: CAZyme
Location: 2104 - 3252 (-)
Gene ID: Rep_958_c_120_4
Type: pfam
Location: 3314 - 4114 (-)
Type: pfam
Location: 3314 - 4114 (-)
Gene ID: Rep_958_c_120_5
Type: TC
Location: 4447 - 6393 (+)
Type: TC
Location: 4447 - 6393 (+)
Gene ID: Rep_958_c_120_6
Type: pfam
Location: 6661 - 8325 (+)
Type: pfam
Location: 6661 - 8325 (+)
Gene ID: Rep_958_c_120_7
Type: TC
Location: 8902 - 10308 (+)
Type: TC
Location: 8902 - 10308 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia ruysiae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_958_c_120_6 | vegan > omnivore | 1.61776 | 0.02789 |
| Rep_958_c_120_6 | vegetarian > omnivore | 2.12446 | 0.01955 |