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Cluster: Rep_958_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_958_c_103 Rep_958_c_103_8 9546 10346 + 3.A.1.13.1
TC Rep_958_c_103 Rep_958_c_103_9 10383 11006 + 1.A.62.2.2
pfam Rep_958_c_103 Rep_958_c_103_10 11053 11397 - Fe-S_biosyn
TC Rep_958_c_103 Rep_958_c_103_11 11479 12900 - 2.A.49.5.1
pfam Rep_958_c_103 Rep_958_c_103_12 13125 14405 + Aminotran_3
TC Rep_958_c_103 Rep_958_c_103_13 14440 16422 - 3.A.1.14.3
TC Rep_958_c_103 Rep_958_c_103_14 16419 17309 - 3.A.1.14.3
TC Rep_958_c_103 Rep_958_c_103_15 17309 18106 - 3.A.1.14.3
TC Rep_958_c_103 Rep_958_c_103_16 18157 20400 - 1.B.14.1.2
NULL(UNKNOWN) Rep_958_c_103 Rep_958_c_103_17 20655 21620 - NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_958_c_103 Rep_958_c_103_18 21620 23776 - HTH_3
CAZyme Rep_958_c_103 Rep_958_c_103_19 24103 26607 - GT51
Gene ID: Rep_958_c_103_8
Type: TC
Location: 9546 - 10346 (+)
Gene ID: Rep_958_c_103_9
Type: TC
Location: 10383 - 11006 (+)
Gene ID: Rep_958_c_103_10
Type: pfam
Location: 11053 - 11397 (-)
Gene ID: Rep_958_c_103_11
Type: TC
Location: 11479 - 12900 (-)
Gene ID: Rep_958_c_103_12
Type: pfam
Location: 13125 - 14405 (+)
Gene ID: Rep_958_c_103_13
Type: TC
Location: 14440 - 16422 (-)
Gene ID: Rep_958_c_103_14
Type: TC
Location: 16419 - 17309 (-)
Gene ID: Rep_958_c_103_15
Type: TC
Location: 17309 - 18106 (-)
Gene ID: Rep_958_c_103_16
Type: TC
Location: 18157 - 20400 (-)
Gene ID: Rep_958_c_103_17
Type:
Location: 20655 - 21620 (-)
Gene ID: Rep_958_c_103_18
Type: TF
Location: 21620 - 23776 (-)
Gene ID: Rep_958_c_103_19
Type: CAZyme
Location: 24103 - 26607 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_958_c_103_8 omnivore > vegetarian 1.96144 0.03416
Rep_958_c_103_9 omnivore > vegetarian 1.37248 0.04169

🧭 Explore Read Mapping of CGC

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