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Cluster: Rep_958_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_958_c_102 Rep_958_c_102_30 33506 34234 + GT51
pfam Rep_958_c_102 Rep_958_c_102_31 34231 34863 - YrbL-PhoP_reg
TC Rep_958_c_102 Rep_958_c_102_32 35087 35359 - 8.A.8.1.5
pfam Rep_958_c_102 Rep_958_c_102_33 35356 36210 - RapZ-like_N | PapZ_C
TC Rep_958_c_102 Rep_958_c_102_34 36256 36747 - 4.A.2.1.7
pfam Rep_958_c_102 Rep_958_c_102_35 36865 37152 - Ribosomal_S30AE
pfam Rep_958_c_102 Rep_958_c_102_36 37175 38608 - Sigma54_AID | Sigma54_DBD | Sigma54_CBD
TC Rep_958_c_102 Rep_958_c_102_37 38656 39381 - 1.B.42.1.2
TC Rep_958_c_102 Rep_958_c_102_38 39388 39945 - 1.B.42.1.2
TC Rep_958_c_102 Rep_958_c_102_39 39914 40489 - 1.B.42.1.2
pfam Rep_958_c_102 Rep_958_c_102_40 40486 41052 - Hydrolase_3
STP Rep_958_c_102 Rep_958_c_102_41 41073 42059 - CBS | CBS | SIS
TC Rep_958_c_102 Rep_958_c_102_42 42073 43050 - 2.A.19.5.1
TC Rep_958_c_102 Rep_958_c_102_43 43259 44068 + 3.A.1.27.3
TC Rep_958_c_102 Rep_958_c_102_44 44076 44858 + 3.A.1.27.3
TC Rep_958_c_102 Rep_958_c_102_45 44863 45414 + 3.A.1.27.3
TC Rep_958_c_102 Rep_958_c_102_46 45433 46068 + 3.A.1.27.3
TC Rep_958_c_102 Rep_958_c_102_47 46068 46361 + 3.A.1.27.3
Gene ID: Rep_958_c_102_30
Type: CAZyme
Location: 33506 - 34234 (+)
Gene ID: Rep_958_c_102_31
Type: pfam
Location: 34231 - 34863 (-)
Gene ID: Rep_958_c_102_32
Type: TC
Location: 35087 - 35359 (-)
Gene ID: Rep_958_c_102_33
Type: pfam
Location: 35356 - 36210 (-)
Gene ID: Rep_958_c_102_34
Type: TC
Location: 36256 - 36747 (-)
Gene ID: Rep_958_c_102_35
Type: pfam
Location: 36865 - 37152 (-)
Gene ID: Rep_958_c_102_36
Type: pfam
Location: 37175 - 38608 (-)
Gene ID: Rep_958_c_102_37
Type: TC
Location: 38656 - 39381 (-)
Gene ID: Rep_958_c_102_38
Type: TC
Location: 39388 - 39945 (-)
Gene ID: Rep_958_c_102_39
Type: TC
Location: 39914 - 40489 (-)
Gene ID: Rep_958_c_102_40
Type: pfam
Location: 40486 - 41052 (-)
Gene ID: Rep_958_c_102_41
Type: STP
Location: 41073 - 42059 (-)
Gene ID: Rep_958_c_102_42
Type: TC
Location: 42073 - 43050 (-)
Gene ID: Rep_958_c_102_43
Type: TC
Location: 43259 - 44068 (+)
Gene ID: Rep_958_c_102_44
Type: TC
Location: 44076 - 44858 (+)
Gene ID: Rep_958_c_102_45
Type: TC
Location: 44863 - 45414 (+)
Gene ID: Rep_958_c_102_46
Type: TC
Location: 45433 - 46068 (+)
Gene ID: Rep_958_c_102_47
Type: TC
Location: 46068 - 46361 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_958_c_102_30 omnivore > vegetarian 1.88985 0.03416
Rep_958_c_102_47 omnivore > vegetarian 2.47516 0.03416

🧭 Explore Read Mapping of CGC

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