Cluster: Rep_958_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_958
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_958_c_12 | Rep_958_c_12_1 | 69 | 2765 | - | 3.A.3.4.1 |
| TF | Rep_958_c_12 | Rep_958_c_12_2 | 3134 | 4081 | + | LacI |
| TC | Rep_958_c_12 | Rep_958_c_12_3 | 4200 | 5621 | + | 4.A.1.2.4 |
| CAZyme | Rep_958_c_12 | Rep_958_c_12_4 | 5671 | 7326 | + | GH13_29 |
Gene ID: Rep_958_c_12_1
Type: TC
Location: 69 - 2765 (-)
Type: TC
Location: 69 - 2765 (-)
Gene ID: Rep_958_c_12_2
Type: TF
Location: 3134 - 4081 (+)
Type: TF
Location: 3134 - 4081 (+)
Gene ID: Rep_958_c_12_3
Type: TC
Location: 4200 - 5621 (+)
Type: TC
Location: 4200 - 5621 (+)
Gene ID: Rep_958_c_12_4
Type: CAZyme
Location: 5671 - 7326 (+)
Type: CAZyme
Location: 5671 - 7326 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia ruysiae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_958_c_12_2 | omnivore > vegetarian | 1.31347 | 0.04762 |