Cluster: Rep_958_CGC17
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_958
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_958_c_81 | Rep_958_c_81_38 | 32812 | 34866 | - | GH42 |
| TF | Rep_958_c_81 | Rep_958_c_81_39 | 35101 | 36183 | + | LacI |
| TC | Rep_958_c_81 | Rep_958_c_81_40 | 36438 | 37673 | + | 2.A.1.5.4 |
| pfam | Rep_958_c_81 | Rep_958_c_81_41 | 37801 | 39126 | + | UPF0004 | Radical_SAM | TRAM_2 |
| TC | Rep_958_c_81 | Rep_958_c_81_42 | 39173 | 40501 | - | 9.B.34.1.1 |
| STP | Rep_958_c_81 | Rep_958_c_81_43 | 40509 | 42857 | - | EAL | dCache_1 |
| TC | Rep_958_c_81 | Rep_958_c_81_44 | 43035 | 43946 | - | 3.A.1.5.11 |
| TC | Rep_958_c_81 | Rep_958_c_81_45 | 43949 | 44869 | - | 3.A.1.5.11 |
| TC | Rep_958_c_81 | Rep_958_c_81_46 | 44887 | 46425 | - | 3.A.1.5.11 |
| TC | Rep_958_c_81 | Rep_958_c_81_47 | 46445 | 48316 | - | 3.A.1.5.11 |
| peptidase | Rep_958_c_81 | Rep_958_c_81_48 | 48303 | 49268 | - | T02.UPW |
| pfam | Rep_958_c_81 | Rep_958_c_81_49 | 49470 | 50705 | + | MoCF_biosynth | MoeA_N | MoeA_C |
| TC | Rep_958_c_81 | Rep_958_c_81_50 | 50705 | 51454 | + | 3.A.25.2.1 |
Gene ID: Rep_958_c_81_38
Type: CAZyme
Location: 32812 - 34866 (-)
Type: CAZyme
Location: 32812 - 34866 (-)
Gene ID: Rep_958_c_81_39
Type: TF
Location: 35101 - 36183 (+)
Type: TF
Location: 35101 - 36183 (+)
Gene ID: Rep_958_c_81_40
Type: TC
Location: 36438 - 37673 (+)
Type: TC
Location: 36438 - 37673 (+)
Gene ID: Rep_958_c_81_41
Type: pfam
Location: 37801 - 39126 (+)
Type: pfam
Location: 37801 - 39126 (+)
Gene ID: Rep_958_c_81_42
Type: TC
Location: 39173 - 40501 (-)
Type: TC
Location: 39173 - 40501 (-)
Gene ID: Rep_958_c_81_43
Type: STP
Location: 40509 - 42857 (-)
Type: STP
Location: 40509 - 42857 (-)
Gene ID: Rep_958_c_81_44
Type: TC
Location: 43035 - 43946 (-)
Type: TC
Location: 43035 - 43946 (-)
Gene ID: Rep_958_c_81_45
Type: TC
Location: 43949 - 44869 (-)
Type: TC
Location: 43949 - 44869 (-)
Gene ID: Rep_958_c_81_46
Type: TC
Location: 44887 - 46425 (-)
Type: TC
Location: 44887 - 46425 (-)
Gene ID: Rep_958_c_81_47
Type: TC
Location: 46445 - 48316 (-)
Type: TC
Location: 46445 - 48316 (-)
Gene ID: Rep_958_c_81_48
Type: peptidase
Location: 48303 - 49268 (-)
Type: peptidase
Location: 48303 - 49268 (-)
Gene ID: Rep_958_c_81_49
Type: pfam
Location: 49470 - 50705 (+)
Type: pfam
Location: 49470 - 50705 (+)
Gene ID: Rep_958_c_81_50
Type: TC
Location: 50705 - 51454 (+)
Type: TC
Location: 50705 - 51454 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia ruysiae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.