Cluster: Rep_958_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_958
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_958_c_77 | Rep_958_c_77_103 | 104661 | 106013 | - | GH4 |
| TF | Rep_958_c_77 | Rep_958_c_77_104 | 106133 | 106972 | - | HTH_AraC | HTH_AraC |
| TC | Rep_958_c_77 | Rep_958_c_77_105 | 106983 | 107333 | - | 4.A.3.2.1 |
| TC | Rep_958_c_77 | Rep_958_c_77_106 | 107384 | 108742 | - | 4.A.3.2.1 |
| TC | Rep_958_c_77 | Rep_958_c_77_107 | 108824 | 109144 | - | 4.A.3.2.1 |
Gene ID: Rep_958_c_77_103
Type: CAZyme
Location: 104661 - 106013 (-)
Type: CAZyme
Location: 104661 - 106013 (-)
Gene ID: Rep_958_c_77_104
Type: TF
Location: 106133 - 106972 (-)
Type: TF
Location: 106133 - 106972 (-)
Gene ID: Rep_958_c_77_105
Type: TC
Location: 106983 - 107333 (-)
Type: TC
Location: 106983 - 107333 (-)
Gene ID: Rep_958_c_77_106
Type: TC
Location: 107384 - 108742 (-)
Type: TC
Location: 107384 - 108742 (-)
Gene ID: Rep_958_c_77_107
Type: TC
Location: 108824 - 109144 (-)
Type: TC
Location: 108824 - 109144 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Species
Escherichia ruysiae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.