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Cluster: Rep_958_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_958_c_56 Rep_958_c_56_3 1578 3299 - 3.A.1.129.1
TC Rep_958_c_56 Rep_958_c_56_4 3300 5066 - 3.A.1.129.1
STP Rep_958_c_56 Rep_958_c_56_5 5189 6154 - Pyr_redox_2
TF Rep_958_c_56 Rep_958_c_56_6 6699 7193 + 0040517
TC Rep_958_c_56 Rep_958_c_56_7 7328 11389 + 3.A.12.1.2
TC Rep_958_c_56 Rep_958_c_56_8 11543 12154 + 1.B.46.1.1
STP Rep_958_c_56 Rep_958_c_56_9 12165 13508 + AAA
pfam Rep_958_c_56 Rep_958_c_56_10 13599 14891 + tRNA-synt_2b | Seryl_tRNA_N
TC Rep_958_c_56 Rep_958_c_56_11 15129 17573 + 5.A.3.3.2
TC Rep_958_c_56 Rep_958_c_56_12 17584 18201 + 5.A.3.3.2
TC Rep_958_c_56 Rep_958_c_56_13 18203 19066 + 5.A.3.3.2
pfam Rep_958_c_56 Rep_958_c_56_14 19103 19729 - Isochorismatase
TC Rep_958_c_56 Rep_958_c_56_15 20068 21192 + 2.A.1.26.1
TC Rep_958_c_56 Rep_958_c_56_16 21400 22830 + 2.A.3.7.2
STP Rep_958_c_56 Rep_958_c_56_17 23927 26275 + EAL
STP Rep_958_c_56 Rep_958_c_56_18 26280 27620 + GGDEF
CAZyme Rep_958_c_56 Rep_958_c_56_19 27705 29819 + GT2
TC Rep_958_c_56 Rep_958_c_56_20 29864 32185 + 4.D.3.1.6
TC Rep_958_c_56 Rep_958_c_56_21 32298 32927 + 1.B.55.3.1
Gene ID: Rep_958_c_56_3
Type: TC
Location: 1578 - 3299 (-)
Gene ID: Rep_958_c_56_4
Type: TC
Location: 3300 - 5066 (-)
Gene ID: Rep_958_c_56_5
Type: STP
Location: 5189 - 6154 (-)
Gene ID: Rep_958_c_56_6
Type: TF
Location: 6699 - 7193 (+)
Gene ID: Rep_958_c_56_7
Type: TC
Location: 7328 - 11389 (+)
Gene ID: Rep_958_c_56_8
Type: TC
Location: 11543 - 12154 (+)
Gene ID: Rep_958_c_56_9
Type: STP
Location: 12165 - 13508 (+)
Gene ID: Rep_958_c_56_10
Type: pfam
Location: 13599 - 14891 (+)
Gene ID: Rep_958_c_56_11
Type: TC
Location: 15129 - 17573 (+)
Gene ID: Rep_958_c_56_12
Type: TC
Location: 17584 - 18201 (+)
Gene ID: Rep_958_c_56_13
Type: TC
Location: 18203 - 19066 (+)
Gene ID: Rep_958_c_56_14
Type: pfam
Location: 19103 - 19729 (-)
Gene ID: Rep_958_c_56_15
Type: TC
Location: 20068 - 21192 (+)
Gene ID: Rep_958_c_56_16
Type: TC
Location: 21400 - 22830 (+)
Gene ID: Rep_958_c_56_17
Type: STP
Location: 23927 - 26275 (+)
Gene ID: Rep_958_c_56_18
Type: STP
Location: 26280 - 27620 (+)
Gene ID: Rep_958_c_56_19
Type: CAZyme
Location: 27705 - 29819 (+)
Gene ID: Rep_958_c_56_20
Type: TC
Location: 29864 - 32185 (+)
Gene ID: Rep_958_c_56_21
Type: TC
Location: 32298 - 32927 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_958_c_56_4 omnivore > vegetarian 1.42316 0.03416
Rep_958_c_56_6 vegetarian > vegan 1.19734 0.03206
Rep_958_c_56_13 omnivore > vegetarian 1.30876 0.04610
Rep_958_c_56_14 omnivore > vegetarian 1.08432 0.03416

🧭 Explore Read Mapping of CGC

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