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Cluster: Rep_958_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_958_c_2 Rep_958_c_2_2 378 3077 + GH18
pfam Rep_958_c_2 Rep_958_c_2_3 3247 3441 + Fer2_BFD
pfam Rep_958_c_2 Rep_958_c_2_4 3514 3990 + Ferritin
TC Rep_958_c_2 Rep_958_c_2_5 4019 4696 - 3.A.15.2.1
pfam Rep_958_c_2 Rep_958_c_2_6 4696 5157 - T2SSM
pfam Rep_958_c_2 Rep_958_c_2_7 5154 6317 - T2SSL | GspL_C
TC Rep_958_c_2 Rep_958_c_2_8 6332 7315 - 3.A.15.1.1
Gene ID: Rep_958_c_2_2
Type: CAZyme
Location: 378 - 3077 (+)
Gene ID: Rep_958_c_2_3
Type: pfam
Location: 3247 - 3441 (+)
Gene ID: Rep_958_c_2_4
Type: pfam
Location: 3514 - 3990 (+)
Gene ID: Rep_958_c_2_5
Type: TC
Location: 4019 - 4696 (-)
Gene ID: Rep_958_c_2_6
Type: pfam
Location: 4696 - 5157 (-)
Gene ID: Rep_958_c_2_7
Type: pfam
Location: 5154 - 6317 (-)
Gene ID: Rep_958_c_2_8
Type: TC
Location: 6332 - 7315 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_958_c_2_7 omnivore > vegetarian 3.33008 0.03596

🧭 Explore Read Mapping of CGC

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