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Cluster: Rep_954_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_954_c_1 Rep_954_c_1_265 286571 287911 + 2.A.8.1.8
TC Rep_954_c_1 Rep_954_c_1_266 288015 288608 - 2.A.95.1.5
pfam Rep_954_c_1 Rep_954_c_1_267 288784 289890 + Semialdhyde_dh | Semialdhyde_dhC
CAZyme Rep_954_c_1 Rep_954_c_1_268 290149 292335 + CBM48 | GH13_9
CAZyme Rep_954_c_1 Rep_954_c_1_269 292332 294314 + CBM48 | GH13_11
pfam Rep_954_c_1 Rep_954_c_1_270 294330 295613 + NTP_transferase | NTP_transf_3 | Hexapep_GlmU
CAZyme Rep_954_c_1 Rep_954_c_1_271 295707 297140 + GT5
CAZyme Rep_954_c_1 Rep_954_c_1_272 297160 299607 + GT35
pfam Rep_954_c_1 Rep_954_c_1_273 299661 301166 - DAO | DAO_C
STP Rep_954_c_1 Rep_954_c_1_274 301384 301713 + Rhodanese
TC Rep_954_c_1 Rep_954_c_1_275 301760 302590 + 9.B.104.1.1
TF Rep_954_c_1 Rep_954_c_1_276 302590 303375 + HTH_DeoR
TF Rep_954_c_1 Rep_954_c_1_277 303415 306120 - GerE
CAZyme Rep_954_c_1 Rep_954_c_1_278 306614 309016 + GT35
CAZyme Rep_954_c_1 Rep_954_c_1_279 309026 311134 + GH77
Gene ID: Rep_954_c_1_265
Type: TC
Location: 286571 - 287911 (+)
Gene ID: Rep_954_c_1_266
Type: TC
Location: 288015 - 288608 (-)
Gene ID: Rep_954_c_1_267
Type: pfam
Location: 288784 - 289890 (+)
Gene ID: Rep_954_c_1_268
Type: CAZyme
Location: 290149 - 292335 (+)
Gene ID: Rep_954_c_1_269
Type: CAZyme
Location: 292332 - 294314 (+)
Gene ID: Rep_954_c_1_270
Type: pfam
Location: 294330 - 295613 (+)
Gene ID: Rep_954_c_1_271
Type: CAZyme
Location: 295707 - 297140 (+)
Gene ID: Rep_954_c_1_272
Type: CAZyme
Location: 297160 - 299607 (+)
Gene ID: Rep_954_c_1_273
Type: pfam
Location: 299661 - 301166 (-)
Gene ID: Rep_954_c_1_274
Type: STP
Location: 301384 - 301713 (+)
Gene ID: Rep_954_c_1_275
Type: TC
Location: 301760 - 302590 (+)
Gene ID: Rep_954_c_1_276
Type: TF
Location: 302590 - 303375 (+)
Gene ID: Rep_954_c_1_277
Type: TF
Location: 303415 - 306120 (-)
Gene ID: Rep_954_c_1_278
Type: CAZyme
Location: 306614 - 309016 (+)
Gene ID: Rep_954_c_1_279
Type: CAZyme
Location: 309026 - 311134 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_954_c_1_274 vegetarian > omnivore 2.80686 0.03512
Rep_954_c_1_274 vegetarian > vegan 3.24399 0.01604

🧭 Explore Read Mapping of CGC

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