Cluster: Rep_954_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_954
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_954_c_1 | Rep_954_c_1_111 | 115697 | 117277 | + | 4.A.1.1.16 |
| CAZyme | Rep_954_c_1 | Rep_954_c_1_112 | 117274 | 118644 | + | GH4 |
| TF | Rep_954_c_1 | Rep_954_c_1_113 | 118674 | 119387 | - | HTH_6 |
| TC | Rep_954_c_1 | Rep_954_c_1_114 | 119466 | 120674 | + | 2.A.1.7.11 |
| pfam | Rep_954_c_1 | Rep_954_c_1_115 | 120671 | 121648 | - | 2-Hacid_dh | 2-Hacid_dh_C |
| TC | Rep_954_c_1 | Rep_954_c_1_116 | 121715 | 122995 | - | 2.A.1.14.8 |
Gene ID: Rep_954_c_1_111
Type: TC
Location: 115697 - 117277 (+)
Type: TC
Location: 115697 - 117277 (+)
Gene ID: Rep_954_c_1_112
Type: CAZyme
Location: 117274 - 118644 (+)
Type: CAZyme
Location: 117274 - 118644 (+)
Gene ID: Rep_954_c_1_113
Type: TF
Location: 118674 - 119387 (-)
Type: TF
Location: 118674 - 119387 (-)
Gene ID: Rep_954_c_1_114
Type: TC
Location: 119466 - 120674 (+)
Type: TC
Location: 119466 - 120674 (+)
Gene ID: Rep_954_c_1_115
Type: pfam
Location: 120671 - 121648 (-)
Type: pfam
Location: 120671 - 121648 (-)
Gene ID: Rep_954_c_1_116
Type: TC
Location: 121715 - 122995 (-)
Type: TC
Location: 121715 - 122995 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Atlantibacter
Species
Atlantibacter hermannii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_954_c_1_116 | vegetarian > omnivore | 1.52081 | 0.04421 |
| Rep_954_c_1_116 | vegetarian > vegan | 1.12287 | 0.04952 |