Cluster: Rep_954_CGC45
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_954
- CGC Family ID: CGCFAM_00261
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_954_c_52 | Rep_954_c_52_5 | 5173 | 6903 | - | 2.A.36.6.11 |
| peptidase | Rep_954_c_52 | Rep_954_c_52_6 | 7033 | 7968 | - | S66.UPW |
| NULL(UNKNOWN) | Rep_954_c_52 | Rep_954_c_52_7 | 8004 | 8117 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_954_c_52 | Rep_954_c_52_8 | 8107 | 8718 | + | GH23 |
| pfam | Rep_954_c_52 | Rep_954_c_52_9 | 8719 | 9450 | - | PilZ | PilZN |
| TC | Rep_954_c_52 | Rep_954_c_52_10 | 9670 | 9924 | + | 1.E.43.1.1 |
Gene ID: Rep_954_c_52_5
Type: TC
Location: 5173 - 6903 (-)
Type: TC
Location: 5173 - 6903 (-)
Gene ID: Rep_954_c_52_6
Type: peptidase
Location: 7033 - 7968 (-)
Type: peptidase
Location: 7033 - 7968 (-)
Gene ID: Rep_954_c_52_7
Type:
Location: 8004 - 8117 (+)
Type:
Location: 8004 - 8117 (+)
Gene ID: Rep_954_c_52_8
Type: CAZyme
Location: 8107 - 8718 (+)
Type: CAZyme
Location: 8107 - 8718 (+)
Gene ID: Rep_954_c_52_9
Type: pfam
Location: 8719 - 9450 (-)
Type: pfam
Location: 8719 - 9450 (-)
Gene ID: Rep_954_c_52_10
Type: TC
Location: 9670 - 9924 (+)
Type: TC
Location: 9670 - 9924 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Atlantibacter
Species
Atlantibacter hermannii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.