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Cluster: Rep_954_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_954_c_35 Rep_954_c_35_17 15280 15582 - 3.A.1.27.3
TC Rep_954_c_35 Rep_954_c_35_18 15582 16211 - 3.A.1.27.3
TC Rep_954_c_35 Rep_954_c_35_19 16227 16778 - 3.A.1.27.3
TC Rep_954_c_35 Rep_954_c_35_20 16782 17564 - 3.A.1.27.3
TC Rep_954_c_35 Rep_954_c_35_21 17572 18387 - 3.A.1.27.3
TC Rep_954_c_35 Rep_954_c_35_22 18620 19594 + 2.A.19.5.1
STP Rep_954_c_35 Rep_954_c_35_23 19608 20594 + CBS | CBS | SIS
pfam Rep_954_c_35 Rep_954_c_35_24 20612 21178 + Hydrolase_3
TC Rep_954_c_35 Rep_954_c_35_25 21175 21750 + 1.B.42.1.2
TC Rep_954_c_35 Rep_954_c_35_26 21719 22276 + 1.B.42.1.2
TC Rep_954_c_35 Rep_954_c_35_27 22283 23008 + 1.B.42.1.2
pfam Rep_954_c_35 Rep_954_c_35_28 23187 24620 + Sigma54_AID | Sigma54_DBD | Sigma54_CBD
pfam Rep_954_c_35 Rep_954_c_35_29 24643 24930 + Ribosomal_S30AE
TC Rep_954_c_35 Rep_954_c_35_30 25014 25493 + 4.A.2.1.20
pfam Rep_954_c_35 Rep_954_c_35_31 25554 26408 + RapZ-like_N | PapZ_C
TC Rep_954_c_35 Rep_954_c_35_32 26405 26677 + 8.A.8.1.5
CAZyme Rep_954_c_35 Rep_954_c_35_33 26689 27417 - GT51
Gene ID: Rep_954_c_35_17
Type: TC
Location: 15280 - 15582 (-)
Gene ID: Rep_954_c_35_18
Type: TC
Location: 15582 - 16211 (-)
Gene ID: Rep_954_c_35_19
Type: TC
Location: 16227 - 16778 (-)
Gene ID: Rep_954_c_35_20
Type: TC
Location: 16782 - 17564 (-)
Gene ID: Rep_954_c_35_21
Type: TC
Location: 17572 - 18387 (-)
Gene ID: Rep_954_c_35_22
Type: TC
Location: 18620 - 19594 (+)
Gene ID: Rep_954_c_35_23
Type: STP
Location: 19608 - 20594 (+)
Gene ID: Rep_954_c_35_24
Type: pfam
Location: 20612 - 21178 (+)
Gene ID: Rep_954_c_35_25
Type: TC
Location: 21175 - 21750 (+)
Gene ID: Rep_954_c_35_26
Type: TC
Location: 21719 - 22276 (+)
Gene ID: Rep_954_c_35_27
Type: TC
Location: 22283 - 23008 (+)
Gene ID: Rep_954_c_35_28
Type: pfam
Location: 23187 - 24620 (+)
Gene ID: Rep_954_c_35_29
Type: pfam
Location: 24643 - 24930 (+)
Gene ID: Rep_954_c_35_30
Type: TC
Location: 25014 - 25493 (+)
Gene ID: Rep_954_c_35_31
Type: pfam
Location: 25554 - 26408 (+)
Gene ID: Rep_954_c_35_32
Type: TC
Location: 26405 - 26677 (+)
Gene ID: Rep_954_c_35_33
Type: CAZyme
Location: 26689 - 27417 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_954_c_35_32 vegetarian > vegan 1.21905 0.04952

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