Cluster: Rep_954_CGC41
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_954
- CGC Family ID: CGCFAM_00144
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_954_c_33 | Rep_954_c_33_9 | 7518 | 8603 | - | 3.A.1.6.1 |
| TC | Rep_954_c_33 | Rep_954_c_33_10 | 8593 | 9468 | - | 3.A.1.6.1 |
| TC | Rep_954_c_33 | Rep_954_c_33_11 | 9468 | 10301 | - | 3.A.1.6.1 |
| TC | Rep_954_c_33 | Rep_954_c_33_12 | 10301 | 11314 | - | 3.A.1.6.1 |
| pfam | Rep_954_c_33 | Rep_954_c_33_13 | 11472 | 12371 | - | Dyp_perox_N | Dyp_perox_C |
| pfam | Rep_954_c_33 | Rep_954_c_33_14 | 12472 | 13044 | - | DUF1131 |
| TC | Rep_954_c_33 | Rep_954_c_33_15 | 13107 | 13559 | - | 9.B.127.1.1 |
| TC | Rep_954_c_33 | Rep_954_c_33_16 | 13664 | 14041 | - | 2.A.7.22.2 |
| TC | Rep_954_c_33 | Rep_954_c_33_17 | 14038 | 14370 | - | 2.A.7.22.2 |
| CAZyme | Rep_954_c_33 | Rep_954_c_33_18 | 14367 | 16025 | - | GT83 |
| NULL(UNKNOWN) | Rep_954_c_33 | Rep_954_c_33_19 | 16022 | 16924 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_954_c_33 | Rep_954_c_33_20 | 16921 | 18903 | - | Formyl_trans_N | Epimerase | Formyl_trans_C | GDP_Man_Dehyd |
| CAZyme | Rep_954_c_33 | Rep_954_c_33_21 | 18903 | 19883 | - | GT2 |
Gene ID: Rep_954_c_33_9
Type: TC
Location: 7518 - 8603 (-)
Type: TC
Location: 7518 - 8603 (-)
Gene ID: Rep_954_c_33_10
Type: TC
Location: 8593 - 9468 (-)
Type: TC
Location: 8593 - 9468 (-)
Gene ID: Rep_954_c_33_11
Type: TC
Location: 9468 - 10301 (-)
Type: TC
Location: 9468 - 10301 (-)
Gene ID: Rep_954_c_33_12
Type: TC
Location: 10301 - 11314 (-)
Type: TC
Location: 10301 - 11314 (-)
Gene ID: Rep_954_c_33_13
Type: pfam
Location: 11472 - 12371 (-)
Type: pfam
Location: 11472 - 12371 (-)
Gene ID: Rep_954_c_33_14
Type: pfam
Location: 12472 - 13044 (-)
Type: pfam
Location: 12472 - 13044 (-)
Gene ID: Rep_954_c_33_15
Type: TC
Location: 13107 - 13559 (-)
Type: TC
Location: 13107 - 13559 (-)
Gene ID: Rep_954_c_33_16
Type: TC
Location: 13664 - 14041 (-)
Type: TC
Location: 13664 - 14041 (-)
Gene ID: Rep_954_c_33_17
Type: TC
Location: 14038 - 14370 (-)
Type: TC
Location: 14038 - 14370 (-)
Gene ID: Rep_954_c_33_18
Type: CAZyme
Location: 14367 - 16025 (-)
Type: CAZyme
Location: 14367 - 16025 (-)
Gene ID: Rep_954_c_33_19
Type:
Location: 16022 - 16924 (-)
Type:
Location: 16022 - 16924 (-)
Gene ID: Rep_954_c_33_20
Type: pfam
Location: 16921 - 18903 (-)
Type: pfam
Location: 16921 - 18903 (-)
Gene ID: Rep_954_c_33_21
Type: CAZyme
Location: 18903 - 19883 (-)
Type: CAZyme
Location: 18903 - 19883 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Atlantibacter
Species
Atlantibacter hermannii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.