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Cluster: Rep_954_CGC38

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_954_c_24 Rep_954_c_24_5 5492 6691 - 2.A.41.1.1
TC Rep_954_c_24 Rep_954_c_24_6 7042 8280 + 2.A.55.3.1
TF Rep_954_c_24 Rep_954_c_24_7 8365 9912 + Mga
CAZyme Rep_954_c_24 Rep_954_c_24_8 9909 11117 - CE9
pfam Rep_954_c_24 Rep_954_c_24_9 11107 12462 - Lyase_1 | ADSL_C
TC Rep_954_c_24 Rep_954_c_24_10 12474 14033 - 4.A.1.1.3
pfam Rep_954_c_24 Rep_954_c_24_11 14221 14547 - DUF2502
TC Rep_954_c_24 Rep_954_c_24_12 14692 15816 - 8.A.5.1.3
pfam Rep_954_c_24 Rep_954_c_24_13 15865 17526 + TPP_enzyme_M | TPP_enzyme_C | TPP_enzyme_N
TC Rep_954_c_24 Rep_954_c_24_14 17523 18755 - 2.A.49.7.1
STP Rep_954_c_24 Rep_954_c_24_15 18960 19925 + Glucokinase
TF Rep_954_c_24 Rep_954_c_24_16 19951 20682 - LytTR
TC Rep_954_c_24 Rep_954_c_24_17 20693 22372 - 9.B.33.1.1
pfam Rep_954_c_24 Rep_954_c_24_18 22472 23710 - Gig2-like
STP Rep_954_c_24 Rep_954_c_24_19 23953 25191 + Aminotran_1_2
TC Rep_954_c_24 Rep_954_c_24_20 25783 26739 - 1.A.16.4.1
TC Rep_954_c_24 Rep_954_c_24_21 26939 27556 + 3.A.1.107.3
TC Rep_954_c_24 Rep_954_c_24_22 27553 28212 + 3.A.1.107.3
TC Rep_954_c_24 Rep_954_c_24_23 28259 28999 + 9.B.14.2.3
TC Rep_954_c_24 Rep_954_c_24_24 28996 29214 + 3.A.1.107.3
pfam Rep_954_c_24 Rep_954_c_24_25 29211 29690 + CcmE
TC Rep_954_c_24 Rep_954_c_24_26 29687 31636 + 9.B.14.1.3
Gene ID: Rep_954_c_24_5
Type: TC
Location: 5492 - 6691 (-)
Gene ID: Rep_954_c_24_6
Type: TC
Location: 7042 - 8280 (+)
Gene ID: Rep_954_c_24_7
Type: TF
Location: 8365 - 9912 (+)
Gene ID: Rep_954_c_24_8
Type: CAZyme
Location: 9909 - 11117 (-)
Gene ID: Rep_954_c_24_9
Type: pfam
Location: 11107 - 12462 (-)
Gene ID: Rep_954_c_24_10
Type: TC
Location: 12474 - 14033 (-)
Gene ID: Rep_954_c_24_11
Type: pfam
Location: 14221 - 14547 (-)
Gene ID: Rep_954_c_24_12
Type: TC
Location: 14692 - 15816 (-)
Gene ID: Rep_954_c_24_13
Type: pfam
Location: 15865 - 17526 (+)
Gene ID: Rep_954_c_24_14
Type: TC
Location: 17523 - 18755 (-)
Gene ID: Rep_954_c_24_15
Type: STP
Location: 18960 - 19925 (+)
Gene ID: Rep_954_c_24_16
Type: TF
Location: 19951 - 20682 (-)
Gene ID: Rep_954_c_24_17
Type: TC
Location: 20693 - 22372 (-)
Gene ID: Rep_954_c_24_18
Type: pfam
Location: 22472 - 23710 (-)
Gene ID: Rep_954_c_24_19
Type: STP
Location: 23953 - 25191 (+)
Gene ID: Rep_954_c_24_20
Type: TC
Location: 25783 - 26739 (-)
Gene ID: Rep_954_c_24_21
Type: TC
Location: 26939 - 27556 (+)
Gene ID: Rep_954_c_24_22
Type: TC
Location: 27553 - 28212 (+)
Gene ID: Rep_954_c_24_23
Type: TC
Location: 28259 - 28999 (+)
Gene ID: Rep_954_c_24_24
Type: TC
Location: 28996 - 29214 (+)
Gene ID: Rep_954_c_24_25
Type: pfam
Location: 29211 - 29690 (+)
Gene ID: Rep_954_c_24_26
Type: TC
Location: 29687 - 31636 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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