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Cluster: Rep_954_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_954_c_14 Rep_954_c_14_26 28736 29530 + 3.A.1.103.6
TC Rep_954_c_14 Rep_954_c_14_27 29530 30753 + 3.A.1.103.6
pfam Rep_954_c_14 Rep_954_c_14_28 30750 32219 + Methyltransf_21
CAZyme Rep_954_c_14 Rep_954_c_14_29 32216 35317 + GT2 | GT4
pfam Rep_954_c_14 Rep_954_c_14_30 36625 37665 + Epimerase | GDP_Man_Dehyd
pfam Rep_954_c_14 Rep_954_c_14_31 37665 38561 + 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
CAZyme Rep_954_c_14 Rep_954_c_14_32 38561 39703 + GT4
CAZyme Rep_954_c_14 Rep_954_c_14_33 39703 40827 + GT4
CAZyme Rep_954_c_14 Rep_954_c_14_34 41219 42163 + GT2
Gene ID: Rep_954_c_14_26
Type: TC
Location: 28736 - 29530 (+)
Gene ID: Rep_954_c_14_27
Type: TC
Location: 29530 - 30753 (+)
Gene ID: Rep_954_c_14_28
Type: pfam
Location: 30750 - 32219 (+)
Gene ID: Rep_954_c_14_29
Type: CAZyme
Location: 32216 - 35317 (+)
Gene ID: Rep_954_c_14_30
Type: pfam
Location: 36625 - 37665 (+)
Gene ID: Rep_954_c_14_31
Type: pfam
Location: 37665 - 38561 (+)
Gene ID: Rep_954_c_14_32
Type: CAZyme
Location: 38561 - 39703 (+)
Gene ID: Rep_954_c_14_33
Type: CAZyme
Location: 39703 - 40827 (+)
Gene ID: Rep_954_c_14_34
Type: CAZyme
Location: 41219 - 42163 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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