Cluster: Rep_954_CGC28
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_954
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_954_c_10 | Rep_954_c_10_84 | 91374 | 92864 | - | 2.A.1.12.1 |
| pfam | Rep_954_c_10 | Rep_954_c_10_85 | 92934 | 93836 | - | DHDPS |
| TF | Rep_954_c_10 | Rep_954_c_10_86 | 93958 | 94749 | - | GntR |
| TC | Rep_954_c_10 | Rep_954_c_10_87 | 94912 | 95814 | + | 2.A.7.3.12 |
| CAZyme | Rep_954_c_10 | Rep_954_c_10_88 | 95851 | 97926 | - | CBM48 | GH13_11 |
| CAZyme | Rep_954_c_10 | Rep_954_c_10_89 | 97977 | 100523 | - | GH13_26 |
| CAZyme | Rep_954_c_10 | Rep_954_c_10_90 | 100523 | 102307 | - | GH13_10 |
Gene ID: Rep_954_c_10_84
Type: TC
Location: 91374 - 92864 (-)
Type: TC
Location: 91374 - 92864 (-)
Gene ID: Rep_954_c_10_85
Type: pfam
Location: 92934 - 93836 (-)
Type: pfam
Location: 92934 - 93836 (-)
Gene ID: Rep_954_c_10_86
Type: TF
Location: 93958 - 94749 (-)
Type: TF
Location: 93958 - 94749 (-)
Gene ID: Rep_954_c_10_87
Type: TC
Location: 94912 - 95814 (+)
Type: TC
Location: 94912 - 95814 (+)
Gene ID: Rep_954_c_10_88
Type: CAZyme
Location: 95851 - 97926 (-)
Type: CAZyme
Location: 95851 - 97926 (-)
Gene ID: Rep_954_c_10_89
Type: CAZyme
Location: 97977 - 100523 (-)
Type: CAZyme
Location: 97977 - 100523 (-)
Gene ID: Rep_954_c_10_90
Type: CAZyme
Location: 100523 - 102307 (-)
Type: CAZyme
Location: 100523 - 102307 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Atlantibacter
Species
Atlantibacter hermannii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.