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Cluster: Rep_954_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_954_c_9 Rep_954_c_9_56 56556 57938 - 2.A.3.2.8
pfam Rep_954_c_9 Rep_954_c_9_57 58127 59071 - YdgH_BhsA-like | YdgH_BhsA-like | YdgH_BhsA-like
TC Rep_954_c_9 Rep_954_c_9_58 59593 61122 + 3.D.2.1.1
TC Rep_954_c_9 Rep_954_c_9_59 61133 62521 + 3.D.2.1.1
CAZyme Rep_954_c_9 Rep_954_c_9_60 62757 64457 + GH13_18
TC Rep_954_c_9 Rep_954_c_9_61 64470 65759 + 3.A.1.1.46
TC Rep_954_c_9 Rep_954_c_9_62 65782 66660 + 3.A.1.1.46
TC Rep_954_c_9 Rep_954_c_9_63 66647 67489 + 3.A.1.1.46
Gene ID: Rep_954_c_9_56
Type: TC
Location: 56556 - 57938 (-)
Gene ID: Rep_954_c_9_57
Type: pfam
Location: 58127 - 59071 (-)
Gene ID: Rep_954_c_9_58
Type: TC
Location: 59593 - 61122 (+)
Gene ID: Rep_954_c_9_59
Type: TC
Location: 61133 - 62521 (+)
Gene ID: Rep_954_c_9_60
Type: CAZyme
Location: 62757 - 64457 (+)
Gene ID: Rep_954_c_9_61
Type: TC
Location: 64470 - 65759 (+)
Gene ID: Rep_954_c_9_62
Type: TC
Location: 65782 - 66660 (+)
Gene ID: Rep_954_c_9_63
Type: TC
Location: 66647 - 67489 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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