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Cluster: Rep_954_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_954_c_8 Rep_954_c_8_40 43534 43881 - 8.A.2.1.3
CAZyme Rep_954_c_8 Rep_954_c_8_41 43990 45576 + AA1
pfam Rep_954_c_8 Rep_954_c_8_42 45627 48026 - PQQ | PQQ | PQQ | PQQ | PQQ | PQQ | PQQ_2
STP Rep_954_c_8 Rep_954_c_8_43 48220 48756 + Pribosyltran
TC Rep_954_c_8 Rep_954_c_8_44 48783 49445 - 2.A.53.3.8
TC Rep_954_c_8 Rep_954_c_8_45 49553 50479 + 3.A.1.105.17
TC Rep_954_c_8 Rep_954_c_8_46 50476 51246 + 3.A.1.105.17
pfam Rep_954_c_8 Rep_954_c_8_47 51370 51801 + EIIA-man
CAZyme Rep_954_c_8 Rep_954_c_8_48 51880 53127 + CE4
Gene ID: Rep_954_c_8_40
Type: TC
Location: 43534 - 43881 (-)
Gene ID: Rep_954_c_8_41
Type: CAZyme
Location: 43990 - 45576 (+)
Gene ID: Rep_954_c_8_42
Type: pfam
Location: 45627 - 48026 (-)
Gene ID: Rep_954_c_8_43
Type: STP
Location: 48220 - 48756 (+)
Gene ID: Rep_954_c_8_44
Type: TC
Location: 48783 - 49445 (-)
Gene ID: Rep_954_c_8_45
Type: TC
Location: 49553 - 50479 (+)
Gene ID: Rep_954_c_8_46
Type: TC
Location: 50476 - 51246 (+)
Gene ID: Rep_954_c_8_47
Type: pfam
Location: 51370 - 51801 (+)
Gene ID: Rep_954_c_8_48
Type: CAZyme
Location: 51880 - 53127 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_954_c_8_44 vegetarian > vegan 1.37781 0.04952
Rep_954_c_8_46 vegetarian > omnivore 1.56995 0.03127
Rep_954_c_8_46 vegetarian > vegan 1.26963 0.04952

🧭 Explore Read Mapping of CGC

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