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Cluster: Rep_954_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_954_c_8 Rep_954_c_8_15 12998 14200 - 3.A.15.2.1
TC Rep_954_c_8 Rep_954_c_8_16 14193 15569 - 3.A.15.2.1
TC Rep_954_c_8 Rep_954_c_8_17 15579 16016 - 3.A.15.2.1
pfam Rep_954_c_8 Rep_954_c_8_18 16195 17085 - QRPTase_C | QRPTase_N
pfam Rep_954_c_8 Rep_954_c_8_19 17173 17736 + Amidase_2
TC Rep_954_c_8 Rep_954_c_8_20 17733 18587 + 9.B.125.1.1
CAZyme Rep_954_c_8 Rep_954_c_8_21 18606 19553 - GH43_26
TC Rep_954_c_8 Rep_954_c_8_22 19553 20959 - 2.A.2.3.4
TC Rep_954_c_8 Rep_954_c_8_23 21126 22496 - 2.A.3.1.3
Gene ID: Rep_954_c_8_15
Type: TC
Location: 12998 - 14200 (-)
Gene ID: Rep_954_c_8_16
Type: TC
Location: 14193 - 15569 (-)
Gene ID: Rep_954_c_8_17
Type: TC
Location: 15579 - 16016 (-)
Gene ID: Rep_954_c_8_18
Type: pfam
Location: 16195 - 17085 (-)
Gene ID: Rep_954_c_8_19
Type: pfam
Location: 17173 - 17736 (+)
Gene ID: Rep_954_c_8_20
Type: TC
Location: 17733 - 18587 (+)
Gene ID: Rep_954_c_8_21
Type: CAZyme
Location: 18606 - 19553 (-)
Gene ID: Rep_954_c_8_22
Type: TC
Location: 19553 - 20959 (-)
Gene ID: Rep_954_c_8_23
Type: TC
Location: 21126 - 22496 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_954_c_8_22 vegetarian > omnivore 1.91429 0.03127

🧭 Explore Read Mapping of CGC

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