Cluster: Rep_954_CGC18
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_954
- CGC Family ID: CGCFAM_00836
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_954_c_4 | Rep_954_c_4_137 | 158650 | 160584 | - | GH23 |
| TC | Rep_954_c_4 | Rep_954_c_4_138 | 160817 | 162484 | + | 3.A.1.120.6 |
| STP | Rep_954_c_4 | Rep_954_c_4_139 | 162925 | 163902 | + | CBS | CBS | SIS |
| TC | Rep_954_c_4 | Rep_954_c_4_140 | 163970 | 165121 | + | 8.A.4.1.1 |
| TC | Rep_954_c_4 | Rep_954_c_4_141 | 165145 | 166815 | + | 1.B.18.1.2 |
| CAZyme | Rep_954_c_4 | Rep_954_c_4_142 | 166866 | 168890 | + | GT107 | GT107 |
| TC | Rep_954_c_4 | Rep_954_c_4_143 | 168918 | 170189 | + | 9.A.41.1.3 |
| pfam | Rep_954_c_4 | Rep_954_c_4_144 | 170186 | 170968 | - | Hexapep |
| CAZyme | Rep_954_c_4 | Rep_954_c_4_145 | 170999 | 172360 | - | GT92 |
| pfam | Rep_954_c_4 | Rep_954_c_4_146 | 172380 | 173888 | - | Stealth_CR2 | Stealth_CR3 |
| CAZyme | Rep_954_c_4 | Rep_954_c_4_147 | 173893 | 174915 | - | GT2 |
| TC | Rep_954_c_4 | Rep_954_c_4_148 | 174912 | 175577 | - | 3.A.1.101.1 |
| TC | Rep_954_c_4 | Rep_954_c_4_149 | 175574 | 176350 | - | 3.A.1.101.1 |
Gene ID: Rep_954_c_4_137
Type: CAZyme
Location: 158650 - 160584 (-)
Type: CAZyme
Location: 158650 - 160584 (-)
Gene ID: Rep_954_c_4_138
Type: TC
Location: 160817 - 162484 (+)
Type: TC
Location: 160817 - 162484 (+)
Gene ID: Rep_954_c_4_139
Type: STP
Location: 162925 - 163902 (+)
Type: STP
Location: 162925 - 163902 (+)
Gene ID: Rep_954_c_4_140
Type: TC
Location: 163970 - 165121 (+)
Type: TC
Location: 163970 - 165121 (+)
Gene ID: Rep_954_c_4_141
Type: TC
Location: 165145 - 166815 (+)
Type: TC
Location: 165145 - 166815 (+)
Gene ID: Rep_954_c_4_142
Type: CAZyme
Location: 166866 - 168890 (+)
Type: CAZyme
Location: 166866 - 168890 (+)
Gene ID: Rep_954_c_4_143
Type: TC
Location: 168918 - 170189 (+)
Type: TC
Location: 168918 - 170189 (+)
Gene ID: Rep_954_c_4_144
Type: pfam
Location: 170186 - 170968 (-)
Type: pfam
Location: 170186 - 170968 (-)
Gene ID: Rep_954_c_4_145
Type: CAZyme
Location: 170999 - 172360 (-)
Type: CAZyme
Location: 170999 - 172360 (-)
Gene ID: Rep_954_c_4_146
Type: pfam
Location: 172380 - 173888 (-)
Type: pfam
Location: 172380 - 173888 (-)
Gene ID: Rep_954_c_4_147
Type: CAZyme
Location: 173893 - 174915 (-)
Type: CAZyme
Location: 173893 - 174915 (-)
Gene ID: Rep_954_c_4_148
Type: TC
Location: 174912 - 175577 (-)
Type: TC
Location: 174912 - 175577 (-)
Gene ID: Rep_954_c_4_149
Type: TC
Location: 175574 - 176350 (-)
Type: TC
Location: 175574 - 176350 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Atlantibacter
Species
Atlantibacter hermannii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.