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Cluster: Rep_954_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_954_c_3 Rep_954_c_3_194 198156 199172 + 2.A.16.1.1
pfam Rep_954_c_3 Rep_954_c_3_195 199169 199762 + TehB | MTS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
pfam Rep_954_c_3 Rep_954_c_3_196 199996 200667 + DUF3313
TC Rep_954_c_3 Rep_954_c_3_197 200770 201939 - 2.A.46.1.9
TF Rep_954_c_3 Rep_954_c_3_198 202036 202575 + HTH_3
peptidase Rep_954_c_3 Rep_954_c_3_199 202712 204676 + U32.003
CAZyme Rep_954_c_3 Rep_954_c_3_200 204713 206362 - GH37
Gene ID: Rep_954_c_3_194
Type: TC
Location: 198156 - 199172 (+)
Gene ID: Rep_954_c_3_195
Type: pfam
Location: 199169 - 199762 (+)
Gene ID: Rep_954_c_3_196
Type: pfam
Location: 199996 - 200667 (+)
Gene ID: Rep_954_c_3_197
Type: TC
Location: 200770 - 201939 (-)
Gene ID: Rep_954_c_3_198
Type: TF
Location: 202036 - 202575 (+)
Gene ID: Rep_954_c_3_199
Type: peptidase
Location: 202712 - 204676 (+)
Gene ID: Rep_954_c_3_200
Type: CAZyme
Location: 204713 - 206362 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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