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Cluster: Rep_954_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_954_c_2 Rep_954_c_2_2 4422 5930 + 2.A.21.2.1
pfam Rep_954_c_2 Rep_954_c_2_3 6508 7296 + PhoH | AAA_19 | AAA_30
TC Rep_954_c_2 Rep_954_c_2_4 7352 8695 - 2.A.13.1.2
pfam Rep_954_c_2 Rep_954_c_2_5 9071 9571 - Ferritin
TC Rep_954_c_2 Rep_954_c_2_6 10343 11332 + 3.A.1.2.2
TC Rep_954_c_2 Rep_954_c_2_7 11386 12900 + 3.A.1.2.2
TC Rep_954_c_2 Rep_954_c_2_8 12914 13900 + 3.A.1.2.2
pfam Rep_954_c_2 Rep_954_c_2_9 14140 14943 + Trehalose_PPase
CAZyme Rep_954_c_2 Rep_954_c_2_10 14918 16342 + GT20
Gene ID: Rep_954_c_2_2
Type: TC
Location: 4422 - 5930 (+)
Gene ID: Rep_954_c_2_3
Type: pfam
Location: 6508 - 7296 (+)
Gene ID: Rep_954_c_2_4
Type: TC
Location: 7352 - 8695 (-)
Gene ID: Rep_954_c_2_5
Type: pfam
Location: 9071 - 9571 (-)
Gene ID: Rep_954_c_2_6
Type: TC
Location: 10343 - 11332 (+)
Gene ID: Rep_954_c_2_7
Type: TC
Location: 11386 - 12900 (+)
Gene ID: Rep_954_c_2_8
Type: TC
Location: 12914 - 13900 (+)
Gene ID: Rep_954_c_2_9
Type: pfam
Location: 14140 - 14943 (+)
Gene ID: Rep_954_c_2_10
Type: CAZyme
Location: 14918 - 16342 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_954_c_2_7 vegetarian > vegan 1.17974 0.04952

🧭 Explore Read Mapping of CGC

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