Cluster: Rep_953_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_953
- CGC Family ID: CGCFAM_09868
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_953_c_3 | Rep_953_c_3_200 | 242828 | 243295 | + | 3.A.7.13.2 |
| TC | Rep_953_c_3 | Rep_953_c_3_201 | 243431 | 244750 | + | 4.A.3.2.6 |
| CAZyme | Rep_953_c_3 | Rep_953_c_3_202 | 244807 | 246210 | + | GH1 |
| pfam | Rep_953_c_3 | Rep_953_c_3_203 | 246368 | 246631 | + | YdgH_BhsA-like |
| TC | Rep_953_c_3 | Rep_953_c_3_204 | 246841 | 248220 | + | 3.A.18.1.1 |
| TC | Rep_953_c_3 | Rep_953_c_3_205 | 249583 | 253224 | + | 1.B.54.1.2 |
Gene ID: Rep_953_c_3_200
Type: TC
Location: 242828 - 243295 (+)
Type: TC
Location: 242828 - 243295 (+)
Gene ID: Rep_953_c_3_201
Type: TC
Location: 243431 - 244750 (+)
Type: TC
Location: 243431 - 244750 (+)
Gene ID: Rep_953_c_3_202
Type: CAZyme
Location: 244807 - 246210 (+)
Type: CAZyme
Location: 244807 - 246210 (+)
Gene ID: Rep_953_c_3_203
Type: pfam
Location: 246368 - 246631 (+)
Type: pfam
Location: 246368 - 246631 (+)
Gene ID: Rep_953_c_3_204
Type: TC
Location: 246841 - 248220 (+)
Type: TC
Location: 246841 - 248220 (+)
Gene ID: Rep_953_c_3_205
Type: TC
Location: 249583 - 253224 (+)
Type: TC
Location: 249583 - 253224 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Hafnia
Species
Hafnia alvei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.