Cluster: Rep_953_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_953
- CGC Family ID: CGCFAM_04024
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_953_c_1 | Rep_953_c_1_279 | 309139 | 310218 | - | GT2 |
| pfam | Rep_953_c_1 | Rep_953_c_1_280 | 310303 | 311418 | - | Glyphos_transf |
| NULL(UNKNOWN) | Rep_953_c_1 | Rep_953_c_1_281 | 311452 | 312396 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_953_c_1 | Rep_953_c_1_282 | 312436 | 313890 | - | GT2 |
| pfam | Rep_953_c_1 | Rep_953_c_1_283 | 313910 | 314347 | - | FliJ |
| TC | Rep_953_c_1 | Rep_953_c_1_284 | 314364 | 315680 | - | 3.A.6.2.1 |
Gene ID: Rep_953_c_1_279
Type: CAZyme
Location: 309139 - 310218 (-)
Type: CAZyme
Location: 309139 - 310218 (-)
Gene ID: Rep_953_c_1_280
Type: pfam
Location: 310303 - 311418 (-)
Type: pfam
Location: 310303 - 311418 (-)
Gene ID: Rep_953_c_1_281
Type:
Location: 311452 - 312396 (-)
Type:
Location: 311452 - 312396 (-)
Gene ID: Rep_953_c_1_282
Type: CAZyme
Location: 312436 - 313890 (-)
Type: CAZyme
Location: 312436 - 313890 (-)
Gene ID: Rep_953_c_1_283
Type: pfam
Location: 313910 - 314347 (-)
Type: pfam
Location: 313910 - 314347 (-)
Gene ID: Rep_953_c_1_284
Type: TC
Location: 314364 - 315680 (-)
Type: TC
Location: 314364 - 315680 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Hafnia
Species
Hafnia alvei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.