Cluster: Rep_953_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_953
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_953_c_1 | Rep_953_c_1_223 | 255207 | 256550 | - | GH4 |
| TF | Rep_953_c_1 | Rep_953_c_1_224 | 256734 | 257570 | - | HTH_AraC | HTH_AraC |
| TC | Rep_953_c_1 | Rep_953_c_1_225 | 257585 | 257932 | - | 4.A.3.2.1 |
| TC | Rep_953_c_1 | Rep_953_c_1_226 | 257996 | 259354 | - | 4.A.3.2.7 |
| TC | Rep_953_c_1 | Rep_953_c_1_227 | 259477 | 259800 | - | 4.A.3.2.1 |
Gene ID: Rep_953_c_1_223
Type: CAZyme
Location: 255207 - 256550 (-)
Type: CAZyme
Location: 255207 - 256550 (-)
Gene ID: Rep_953_c_1_224
Type: TF
Location: 256734 - 257570 (-)
Type: TF
Location: 256734 - 257570 (-)
Gene ID: Rep_953_c_1_225
Type: TC
Location: 257585 - 257932 (-)
Type: TC
Location: 257585 - 257932 (-)
Gene ID: Rep_953_c_1_226
Type: TC
Location: 257996 - 259354 (-)
Type: TC
Location: 257996 - 259354 (-)
Gene ID: Rep_953_c_1_227
Type: TC
Location: 259477 - 259800 (-)
Type: TC
Location: 259477 - 259800 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Hafnia
Species
Hafnia alvei
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.