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Cluster: Rep_953_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_953_c_23 Rep_953_c_23_40 40101 43217 + GH2
pfam Rep_953_c_23 Rep_953_c_23_41 43309 43734 + Acetyltransf_1 | FR47 | Acetyltransf_6 | Acetyltransf_7 | Acetyltransf_10
TC Rep_953_c_23 Rep_953_c_23_42 43815 44282 + 9.B.127.1.1
pfam Rep_953_c_23 Rep_953_c_23_43 44411 44995 + DUF1131
pfam Rep_953_c_23 Rep_953_c_23_44 45218 46117 + Dyp_perox_N | Dyp_perox_C
TC Rep_953_c_23 Rep_953_c_23_45 46338 47342 + 3.A.1.6.1
TC Rep_953_c_23 Rep_953_c_23_46 47342 48181 + 3.A.1.6.1
TC Rep_953_c_23 Rep_953_c_23_47 48181 49059 + 3.A.1.6.1
TC Rep_953_c_23 Rep_953_c_23_48 49056 50150 + 3.A.1.6.1
STP Rep_953_c_23 Rep_953_c_23_49 50265 51149 + PALP
TC Rep_953_c_23 Rep_953_c_23_50 51253 51762 - 4.A.3.2.5
TC Rep_953_c_23 Rep_953_c_23_51 51809 53536 - 8.A.7.1.1
TC Rep_953_c_23 Rep_953_c_23_52 53587 53844 - 8.A.8.1.1
STP Rep_953_c_23 Rep_953_c_23_53 54231 55199 - PALP
TC Rep_953_c_23 Rep_953_c_23_54 55390 56175 - 2.A.121.1.1
Gene ID: Rep_953_c_23_40
Type: CAZyme
Location: 40101 - 43217 (+)
Gene ID: Rep_953_c_23_41
Type: pfam
Location: 43309 - 43734 (+)
Gene ID: Rep_953_c_23_42
Type: TC
Location: 43815 - 44282 (+)
Gene ID: Rep_953_c_23_43
Type: pfam
Location: 44411 - 44995 (+)
Gene ID: Rep_953_c_23_44
Type: pfam
Location: 45218 - 46117 (+)
Gene ID: Rep_953_c_23_45
Type: TC
Location: 46338 - 47342 (+)
Gene ID: Rep_953_c_23_46
Type: TC
Location: 47342 - 48181 (+)
Gene ID: Rep_953_c_23_47
Type: TC
Location: 48181 - 49059 (+)
Gene ID: Rep_953_c_23_48
Type: TC
Location: 49056 - 50150 (+)
Gene ID: Rep_953_c_23_49
Type: STP
Location: 50265 - 51149 (+)
Gene ID: Rep_953_c_23_50
Type: TC
Location: 51253 - 51762 (-)
Gene ID: Rep_953_c_23_51
Type: TC
Location: 51809 - 53536 (-)
Gene ID: Rep_953_c_23_52
Type: TC
Location: 53587 - 53844 (-)
Gene ID: Rep_953_c_23_53
Type: STP
Location: 54231 - 55199 (-)
Gene ID: Rep_953_c_23_54
Type: TC
Location: 55390 - 56175 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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