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Cluster: Rep_953_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_953_c_10 Rep_953_c_10_30 34282 35736 + 2.A.66.1.22
sulfatase Rep_953_c_10 Rep_953_c_10_31 35792 36937 - S1_6
TF Rep_953_c_10 Rep_953_c_10_32 36934 37725 - GntR
TC Rep_953_c_10 Rep_953_c_10_33 37722 39377 - 2.A.14.1.1
TF Rep_953_c_10 Rep_953_c_10_34 39624 40517 - HTH_1
STP Rep_953_c_10 Rep_953_c_10_35 40703 41098 + AraC_binding
TC Rep_953_c_10 Rep_953_c_10_36 41227 41640 + 9.B.35.1.2
STP Rep_953_c_10 Rep_953_c_10_37 41701 42381 - TetR_N
TC Rep_953_c_10 Rep_953_c_10_38 42894 44057 + 8.A.1.6.1
TC Rep_953_c_10 Rep_953_c_10_39 44096 47209 + 2.A.6.2.1
TC Rep_953_c_10 Rep_953_c_10_40 47643 48599 + 3.A.1.2.25
TC Rep_953_c_10 Rep_953_c_10_41 48696 50201 + 3.A.1.2.25
TC Rep_953_c_10 Rep_953_c_10_42 50215 51234 + 3.A.1.2.25
TC Rep_953_c_10 Rep_953_c_10_43 51227 52234 + 3.A.1.2.25
CAZyme Rep_953_c_10 Rep_953_c_10_44 52352 52957 - GH23
Gene ID: Rep_953_c_10_30
Type: TC
Location: 34282 - 35736 (+)
Gene ID: Rep_953_c_10_31
Type: sulfatase
Location: 35792 - 36937 (-)
Gene ID: Rep_953_c_10_32
Type: TF
Location: 36934 - 37725 (-)
Gene ID: Rep_953_c_10_33
Type: TC
Location: 37722 - 39377 (-)
Gene ID: Rep_953_c_10_34
Type: TF
Location: 39624 - 40517 (-)
Gene ID: Rep_953_c_10_35
Type: STP
Location: 40703 - 41098 (+)
Gene ID: Rep_953_c_10_36
Type: TC
Location: 41227 - 41640 (+)
Gene ID: Rep_953_c_10_37
Type: STP
Location: 41701 - 42381 (-)
Gene ID: Rep_953_c_10_38
Type: TC
Location: 42894 - 44057 (+)
Gene ID: Rep_953_c_10_39
Type: TC
Location: 44096 - 47209 (+)
Gene ID: Rep_953_c_10_40
Type: TC
Location: 47643 - 48599 (+)
Gene ID: Rep_953_c_10_41
Type: TC
Location: 48696 - 50201 (+)
Gene ID: Rep_953_c_10_42
Type: TC
Location: 50215 - 51234 (+)
Gene ID: Rep_953_c_10_43
Type: TC
Location: 51227 - 52234 (+)
Gene ID: Rep_953_c_10_44
Type: CAZyme
Location: 52352 - 52957 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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