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Cluster: Rep_953_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_953_c_1 Rep_953_c_1_20 20906 22213 + GH4
TF Rep_953_c_1 Rep_953_c_1_21 22280 23257 + LacI
TC Rep_953_c_1 Rep_953_c_1_22 23463 24647 + 2.A.1.7.14
peptidase Rep_953_c_1 Rep_953_c_1_23 24717 26000 - M38.UNW
TC Rep_953_c_1 Rep_953_c_1_24 25990 27261 - 2.A.39.1.1
STP Rep_953_c_1 Rep_953_c_1_25 27622 30174 + NIR_SIR | NIR_SIR_ferr | Pyr_redox_2
pfam Rep_953_c_1 Rep_953_c_1_26 30171 30503 + Rieske_2
TC Rep_953_c_1 Rep_953_c_1_27 30699 31502 + 1.A.16.3.1
Gene ID: Rep_953_c_1_20
Type: CAZyme
Location: 20906 - 22213 (+)
Gene ID: Rep_953_c_1_21
Type: TF
Location: 22280 - 23257 (+)
Gene ID: Rep_953_c_1_22
Type: TC
Location: 23463 - 24647 (+)
Gene ID: Rep_953_c_1_23
Type: peptidase
Location: 24717 - 26000 (-)
Gene ID: Rep_953_c_1_24
Type: TC
Location: 25990 - 27261 (-)
Gene ID: Rep_953_c_1_25
Type: STP
Location: 27622 - 30174 (+)
Gene ID: Rep_953_c_1_26
Type: pfam
Location: 30171 - 30503 (+)
Gene ID: Rep_953_c_1_27
Type: TC
Location: 30699 - 31502 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_953_c_1_23 omnivore > vegetarian 2.92063 0.00219
Rep_953_c_1_24 omnivore > vegetarian 2.23963 0.00560

🧭 Explore Read Mapping of CGC

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