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Cluster: Rep_953_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_953_c_8 Rep_953_c_8_85 88259 89398 + 3.A.1.11.1
TC Rep_953_c_8 Rep_953_c_8_86 89382 90242 + 3.A.1.11.1
TC Rep_953_c_8 Rep_953_c_8_87 90239 91018 + 3.A.1.11.1
TC Rep_953_c_8 Rep_953_c_8_88 91225 93585 - 1.B.14.1.20
STP Rep_953_c_8 Rep_953_c_8_89 93710 94681 - FecR
STP Rep_953_c_8 Rep_953_c_8_90 94683 95210 - Sigma70_r2 | Sigma70_r4_2
TC Rep_953_c_8 Rep_953_c_8_91 95469 96842 + 2.A.3.2.2
TC Rep_953_c_8 Rep_953_c_8_92 97065 98129 + 3.A.1.11.1
peptidase Rep_953_c_8 Rep_953_c_8_93 98189 98731 - S09.UNW
CAZyme Rep_953_c_8 Rep_953_c_8_94 98800 99819 - GH3
Gene ID: Rep_953_c_8_85
Type: TC
Location: 88259 - 89398 (+)
Gene ID: Rep_953_c_8_86
Type: TC
Location: 89382 - 90242 (+)
Gene ID: Rep_953_c_8_87
Type: TC
Location: 90239 - 91018 (+)
Gene ID: Rep_953_c_8_88
Type: TC
Location: 91225 - 93585 (-)
Gene ID: Rep_953_c_8_89
Type: STP
Location: 93710 - 94681 (-)
Gene ID: Rep_953_c_8_90
Type: STP
Location: 94683 - 95210 (-)
Gene ID: Rep_953_c_8_91
Type: TC
Location: 95469 - 96842 (+)
Gene ID: Rep_953_c_8_92
Type: TC
Location: 97065 - 98129 (+)
Gene ID: Rep_953_c_8_93
Type: peptidase
Location: 98189 - 98731 (-)
Gene ID: Rep_953_c_8_94
Type: CAZyme
Location: 98800 - 99819 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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