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Cluster: Rep_953_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_953_c_8 Rep_953_c_8_8 6507 6935 - 2.A.7.22.1
TC Rep_953_c_8 Rep_953_c_8_9 6935 7279 - 2.A.7.22.2
CAZyme Rep_953_c_8 Rep_953_c_8_10 7279 8934 - GT83
pfam Rep_953_c_8 Rep_953_c_8_11 8931 9851 - Polysacc_deac_1
pfam Rep_953_c_8 Rep_953_c_8_12 9848 11830 - Formyl_trans_N | Epimerase | Formyl_trans_C | GDP_Man_Dehyd
CAZyme Rep_953_c_8 Rep_953_c_8_13 11830 12846 - GT2
STP Rep_953_c_8 Rep_953_c_8_14 12839 13987 - Aminotran_1_2
TC Rep_953_c_8 Rep_953_c_8_15 14271 15059 - 3.A.1.13.1
TC Rep_953_c_8 Rep_953_c_8_16 15059 16093 - 3.A.1.13.1
Gene ID: Rep_953_c_8_8
Type: TC
Location: 6507 - 6935 (-)
Gene ID: Rep_953_c_8_9
Type: TC
Location: 6935 - 7279 (-)
Gene ID: Rep_953_c_8_10
Type: CAZyme
Location: 7279 - 8934 (-)
Gene ID: Rep_953_c_8_11
Type: pfam
Location: 8931 - 9851 (-)
Gene ID: Rep_953_c_8_12
Type: pfam
Location: 9848 - 11830 (-)
Gene ID: Rep_953_c_8_13
Type: CAZyme
Location: 11830 - 12846 (-)
Gene ID: Rep_953_c_8_14
Type: STP
Location: 12839 - 13987 (-)
Gene ID: Rep_953_c_8_15
Type: TC
Location: 14271 - 15059 (-)
Gene ID: Rep_953_c_8_16
Type: TC
Location: 15059 - 16093 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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