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Cluster: Rep_953_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_953_c_4 Rep_953_c_4_134 175069 175563 - 3.D.7.2.3
TC Rep_953_c_4 Rep_953_c_4_135 175563 177266 - 3.D.7.2.3
NULL(UNKNOWN) Rep_953_c_4 Rep_953_c_4_136 177263 178450 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_953_c_4 Rep_953_c_4_137 178443 179426 - 5.A.3.2.1
TC Rep_953_c_4 Rep_953_c_4_138 179429 180583 - 3.D.7.2.2
CAZyme Rep_953_c_4 Rep_953_c_4_139 181221 183584 - GH31_2
TC Rep_953_c_4 Rep_953_c_4_140 183614 184921 - 2.A.1.14.2
TF Rep_953_c_4 Rep_953_c_4_141 185254 186324 + LacI
TC Rep_953_c_4 Rep_953_c_4_142 186354 187751 - 4.A.1.2.2
STP Rep_953_c_4 Rep_953_c_4_143 187791 188861 - SIS
TF Rep_953_c_4 Rep_953_c_4_144 189097 190146 - LacI
CAZyme Rep_953_c_4 Rep_953_c_4_145 190340 192658 + GH3
NULL(UNKNOWN) Rep_953_c_4 Rep_953_c_4_146 192906 193064 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_953_c_4 Rep_953_c_4_147 193133 194740 - 3.A.1.5.41
TC Rep_953_c_4 Rep_953_c_4_148 194901 196250 - 2.A.66.1.7
Gene ID: Rep_953_c_4_134
Type: TC
Location: 175069 - 175563 (-)
Gene ID: Rep_953_c_4_135
Type: TC
Location: 175563 - 177266 (-)
Gene ID: Rep_953_c_4_136
Type:
Location: 177263 - 178450 (-)
Gene ID: Rep_953_c_4_137
Type: TC
Location: 178443 - 179426 (-)
Gene ID: Rep_953_c_4_138
Type: TC
Location: 179429 - 180583 (-)
Gene ID: Rep_953_c_4_139
Type: CAZyme
Location: 181221 - 183584 (-)
Gene ID: Rep_953_c_4_140
Type: TC
Location: 183614 - 184921 (-)
Gene ID: Rep_953_c_4_141
Type: TF
Location: 185254 - 186324 (+)
Gene ID: Rep_953_c_4_142
Type: TC
Location: 186354 - 187751 (-)
Gene ID: Rep_953_c_4_143
Type: STP
Location: 187791 - 188861 (-)
Gene ID: Rep_953_c_4_144
Type: TF
Location: 189097 - 190146 (-)
Gene ID: Rep_953_c_4_145
Type: CAZyme
Location: 190340 - 192658 (+)
Gene ID: Rep_953_c_4_146
Type:
Location: 192906 - 193064 (+)
Gene ID: Rep_953_c_4_147
Type: TC
Location: 193133 - 194740 (-)
Gene ID: Rep_953_c_4_148
Type: TC
Location: 194901 - 196250 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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