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Cluster: Rep_953_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_953_c_4 Rep_953_c_4_34 40591 41679 + 2.A.98.1.3
pfam Rep_953_c_4 Rep_953_c_4_35 42551 43408 + AP_endonuc_2
TC Rep_953_c_4 Rep_953_c_4_36 43485 45173 - 4.A.2.1.1
STP Rep_953_c_4 Rep_953_c_4_37 45188 46126 - PfkB
TC Rep_953_c_4 Rep_953_c_4_38 46129 47262 - 4.A.2.1.1
STP Rep_953_c_4 Rep_953_c_4_39 47523 47951 + NUDIX
TC Rep_953_c_4 Rep_953_c_4_40 48388 49131 + 3.A.1.3.2
TC Rep_953_c_4 Rep_953_c_4_41 49387 50055 + 3.A.1.3.2
TC Rep_953_c_4 Rep_953_c_4_42 50052 50774 + 3.A.1.3.2
TC Rep_953_c_4 Rep_953_c_4_43 50875 52281 - 2.A.1.3.59
peptidase Rep_953_c_4 Rep_953_c_4_44 52399 53574 - M20.UPD
CAZyme Rep_953_c_4 Rep_953_c_4_45 53747 56128 + GH39
TC Rep_953_c_4 Rep_953_c_4_46 56365 58587 + 1.A.23.3.2
Gene ID: Rep_953_c_4_34
Type: TC
Location: 40591 - 41679 (+)
Gene ID: Rep_953_c_4_35
Type: pfam
Location: 42551 - 43408 (+)
Gene ID: Rep_953_c_4_36
Type: TC
Location: 43485 - 45173 (-)
Gene ID: Rep_953_c_4_37
Type: STP
Location: 45188 - 46126 (-)
Gene ID: Rep_953_c_4_38
Type: TC
Location: 46129 - 47262 (-)
Gene ID: Rep_953_c_4_39
Type: STP
Location: 47523 - 47951 (+)
Gene ID: Rep_953_c_4_40
Type: TC
Location: 48388 - 49131 (+)
Gene ID: Rep_953_c_4_41
Type: TC
Location: 49387 - 50055 (+)
Gene ID: Rep_953_c_4_42
Type: TC
Location: 50052 - 50774 (+)
Gene ID: Rep_953_c_4_43
Type: TC
Location: 50875 - 52281 (-)
Gene ID: Rep_953_c_4_44
Type: peptidase
Location: 52399 - 53574 (-)
Gene ID: Rep_953_c_4_45
Type: CAZyme
Location: 53747 - 56128 (+)
Gene ID: Rep_953_c_4_46
Type: TC
Location: 56365 - 58587 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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