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Cluster: Rep_953_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_953_c_4 Rep_953_c_4_8 8140 9339 - GT4
pfam Rep_953_c_4 Rep_953_c_4_9 9340 10470 - Epimerase_2
pfam Rep_953_c_4 Rep_953_c_4_10 10467 11573 - Epimerase | Polysacc_synt_2 | NAD_binding_4 | Polysacc_synt_C
TC Rep_953_c_4 Rep_953_c_4_11 11575 12609 - 9.B.18.2.1
CAZyme Rep_953_c_4 Rep_953_c_4_12 12753 13853 - GT4
pfam Rep_953_c_4 Rep_953_c_4_13 13850 14992 - EpsG
pfam Rep_953_c_4 Rep_953_c_4_14 14995 16212 - Polysacc_synt | Polysacc_synt_3
CAZyme Rep_953_c_4 Rep_953_c_4_15 16390 17445 - GT4
CAZyme Rep_953_c_4 Rep_953_c_4_16 17435 18553 - GT4
pfam Rep_953_c_4 Rep_953_c_4_17 18556 19719 - Glyphos_transf
pfam Rep_953_c_4 Rep_953_c_4_18 19716 20111 - CTP_transf_like
TC Rep_953_c_4 Rep_953_c_4_19 20574 22157 + 2.A.109.2.3
TC Rep_953_c_4 Rep_953_c_4_20 22236 23594 - 2.A.61.1.1
TC Rep_953_c_4 Rep_953_c_4_21 23921 25783 - 9.B.22.2.1
pfam Rep_953_c_4 Rep_953_c_4_22 25879 26460 - DCD_N | DCD
pfam Rep_953_c_4 Rep_953_c_4_23 26660 27301 - PRK
TC Rep_953_c_4 Rep_953_c_4_24 27492 28604 - 3.A.1.132.3
pfam Rep_953_c_4 Rep_953_c_4_25 28944 30998 + tRNA-synt_1 | tRNA_bind | tRNA-synt_1g | Anticodon_3
TC Rep_953_c_4 Rep_953_c_4_26 31070 33034 - 1.B.14.1.4
TC Rep_953_c_4 Rep_953_c_4_27 33273 34061 - 3.A.1.14.6
TC Rep_953_c_4 Rep_953_c_4_28 34058 35140 - 3.A.1.14.16
STP Rep_953_c_4 Rep_953_c_4_29 35197 36342 - Peripla_BP_2
TC Rep_953_c_4 Rep_953_c_4_30 36598 38082 - 2.A.3.1.2
Gene ID: Rep_953_c_4_8
Type: CAZyme
Location: 8140 - 9339 (-)
Gene ID: Rep_953_c_4_9
Type: pfam
Location: 9340 - 10470 (-)
Gene ID: Rep_953_c_4_10
Type: pfam
Location: 10467 - 11573 (-)
Gene ID: Rep_953_c_4_11
Type: TC
Location: 11575 - 12609 (-)
Gene ID: Rep_953_c_4_12
Type: CAZyme
Location: 12753 - 13853 (-)
Gene ID: Rep_953_c_4_13
Type: pfam
Location: 13850 - 14992 (-)
Gene ID: Rep_953_c_4_14
Type: pfam
Location: 14995 - 16212 (-)
Gene ID: Rep_953_c_4_15
Type: CAZyme
Location: 16390 - 17445 (-)
Gene ID: Rep_953_c_4_16
Type: CAZyme
Location: 17435 - 18553 (-)
Gene ID: Rep_953_c_4_17
Type: pfam
Location: 18556 - 19719 (-)
Gene ID: Rep_953_c_4_18
Type: pfam
Location: 19716 - 20111 (-)
Gene ID: Rep_953_c_4_19
Type: TC
Location: 20574 - 22157 (+)
Gene ID: Rep_953_c_4_20
Type: TC
Location: 22236 - 23594 (-)
Gene ID: Rep_953_c_4_21
Type: TC
Location: 23921 - 25783 (-)
Gene ID: Rep_953_c_4_22
Type: pfam
Location: 25879 - 26460 (-)
Gene ID: Rep_953_c_4_23
Type: pfam
Location: 26660 - 27301 (-)
Gene ID: Rep_953_c_4_24
Type: TC
Location: 27492 - 28604 (-)
Gene ID: Rep_953_c_4_25
Type: pfam
Location: 28944 - 30998 (+)
Gene ID: Rep_953_c_4_26
Type: TC
Location: 31070 - 33034 (-)
Gene ID: Rep_953_c_4_27
Type: TC
Location: 33273 - 34061 (-)
Gene ID: Rep_953_c_4_28
Type: TC
Location: 34058 - 35140 (-)
Gene ID: Rep_953_c_4_29
Type: STP
Location: 35197 - 36342 (-)
Gene ID: Rep_953_c_4_30
Type: TC
Location: 36598 - 38082 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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