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Cluster: Rep_951_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_951_c_1 Rep_951_c_1_37 29570 30481 - 2.A.7.3.2
TC Rep_951_c_1 Rep_951_c_1_38 30977 31396 + 3.D.1.9.2
TC Rep_951_c_1 Rep_951_c_1_39 31445 33130 + 3.D.1.9.2
TF Rep_951_c_1 Rep_951_c_1_40 33355 34992 - HTH_8
NULL(UNKNOWN) Rep_951_c_1 Rep_951_c_1_41 35402 35665 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_951_c_1 Rep_951_c_1_42 35607 35978 + 3.D.1.9.2
pfam Rep_951_c_1 Rep_951_c_1_43 35989 36330 + HypA
pfam Rep_951_c_1 Rep_951_c_1_44 36367 36639 + HupF_HypC
CAZyme Rep_951_c_1 Rep_951_c_1_45 36889 38241 + GH32
pfam Rep_951_c_1 Rep_951_c_1_46 38317 38673 - Fumarate_red_D
pfam Rep_951_c_1 Rep_951_c_1_47 38691 39083 - Fumarate_red_C
TC Rep_951_c_1 Rep_951_c_1_48 39095 39829 - 3.D.10.1.3
TC Rep_951_c_1 Rep_951_c_1_49 39822 41624 - 3.D.10.1.6
Gene ID: Rep_951_c_1_37
Type: TC
Location: 29570 - 30481 (-)
Gene ID: Rep_951_c_1_38
Type: TC
Location: 30977 - 31396 (+)
Gene ID: Rep_951_c_1_39
Type: TC
Location: 31445 - 33130 (+)
Gene ID: Rep_951_c_1_40
Type: TF
Location: 33355 - 34992 (-)
Gene ID: Rep_951_c_1_41
Type:
Location: 35402 - 35665 (+)
Gene ID: Rep_951_c_1_42
Type: TC
Location: 35607 - 35978 (+)
Gene ID: Rep_951_c_1_43
Type: pfam
Location: 35989 - 36330 (+)
Gene ID: Rep_951_c_1_44
Type: pfam
Location: 36367 - 36639 (+)
Gene ID: Rep_951_c_1_45
Type: CAZyme
Location: 36889 - 38241 (+)
Gene ID: Rep_951_c_1_46
Type: pfam
Location: 38317 - 38673 (-)
Gene ID: Rep_951_c_1_47
Type: pfam
Location: 38691 - 39083 (-)
Gene ID: Rep_951_c_1_48
Type: TC
Location: 39095 - 39829 (-)
Gene ID: Rep_951_c_1_49
Type: TC
Location: 39822 - 41624 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_951_c_1_49 omnivore > vegan 1.13961 0.03443

🧭 Explore Read Mapping of CGC

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