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Cluster: Rep_950_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_950_c_4 Rep_950_c_4_173 193378 195885 + GT51
NULL(UNKNOWN) Rep_950_c_4 Rep_950_c_4_174 196008 196178 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_950_c_4 Rep_950_c_4_175 196202 196792 - Fic
TC Rep_950_c_4 Rep_950_c_4_176 196922 197578 - 5.A.3.2.1
TC Rep_950_c_4 Rep_950_c_4_177 197571 198461 - 5.A.3.2.1
TC Rep_950_c_4 Rep_950_c_4_178 198471 200882 - 5.A.3.2.1
TC Rep_950_c_4 Rep_950_c_4_179 200931 201518 - 5.A.3.2.1
TF Rep_950_c_4 Rep_950_c_4_180 201790 202575 - HTH_AraC | HTH_AraC
TC Rep_950_c_4 Rep_950_c_4_181 202964 205384 + 5.A.3.3.2
TC Rep_950_c_4 Rep_950_c_4_182 205381 206022 + 5.A.3.3.1
Gene ID: Rep_950_c_4_173
Type: CAZyme
Location: 193378 - 195885 (+)
Gene ID: Rep_950_c_4_174
Type:
Location: 196008 - 196178 (+)
Gene ID: Rep_950_c_4_175
Type: pfam
Location: 196202 - 196792 (-)
Gene ID: Rep_950_c_4_176
Type: TC
Location: 196922 - 197578 (-)
Gene ID: Rep_950_c_4_177
Type: TC
Location: 197571 - 198461 (-)
Gene ID: Rep_950_c_4_178
Type: TC
Location: 198471 - 200882 (-)
Gene ID: Rep_950_c_4_179
Type: TC
Location: 200931 - 201518 (-)
Gene ID: Rep_950_c_4_180
Type: TF
Location: 201790 - 202575 (-)
Gene ID: Rep_950_c_4_181
Type: TC
Location: 202964 - 205384 (+)
Gene ID: Rep_950_c_4_182
Type: TC
Location: 205381 - 206022 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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