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Cluster: Rep_950_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_950_c_3 Rep_950_c_3_2 1136 2551 + 2.A.1.3.51
TF Rep_950_c_3 Rep_950_c_3_3 2548 3540 - LacI
STP Rep_950_c_3 Rep_950_c_3_4 3554 4480 - PfkB
TC Rep_950_c_3 Rep_950_c_3_5 4545 5435 - 3.A.1.2.1
TC Rep_950_c_3 Rep_950_c_3_6 5469 6440 - 3.A.1.2.1
TC Rep_950_c_3 Rep_950_c_3_7 6444 7949 - 3.A.1.2.1
pfam Rep_950_c_3 Rep_950_c_3_8 7957 8376 - RbsD_FucU
CAZyme Rep_950_c_3 Rep_950_c_3_9 8721 9296 + AA10
Gene ID: Rep_950_c_3_2
Type: TC
Location: 1136 - 2551 (+)
Gene ID: Rep_950_c_3_3
Type: TF
Location: 2548 - 3540 (-)
Gene ID: Rep_950_c_3_4
Type: STP
Location: 3554 - 4480 (-)
Gene ID: Rep_950_c_3_5
Type: TC
Location: 4545 - 5435 (-)
Gene ID: Rep_950_c_3_6
Type: TC
Location: 5469 - 6440 (-)
Gene ID: Rep_950_c_3_7
Type: TC
Location: 6444 - 7949 (-)
Gene ID: Rep_950_c_3_8
Type: pfam
Location: 7957 - 8376 (-)
Gene ID: Rep_950_c_3_9
Type: CAZyme
Location: 8721 - 9296 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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