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Cluster: Rep_950_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_950_c_24 Rep_950_c_24_229 228178 228432 + 8.B.24.4.1
TF Rep_950_c_24 Rep_950_c_24_230 228547 229356 - HTH_DeoR
pfam Rep_950_c_24 Rep_950_c_24_231 229616 230938 + GatZ_KbaZ-like
TC Rep_950_c_24 Rep_950_c_24_232 230920 231393 + 4.A.6.1.4
TC Rep_950_c_24 Rep_950_c_24_233 231404 232183 + 4.A.6.1.4
TC Rep_950_c_24 Rep_950_c_24_234 232173 233048 + 4.A.6.1.4
TC Rep_950_c_24 Rep_950_c_24_235 233064 233498 + 4.A.6.1.14
CAZyme Rep_950_c_24 Rep_950_c_24_236 233495 234634 + CE9
STP Rep_950_c_24 Rep_950_c_24_237 234918 236084 + SIS | SIS
pfam Rep_950_c_24 Rep_950_c_24_238 236087 236944 + F_bP_aldolase
TC Rep_950_c_24 Rep_950_c_24_239 237085 238656 + 4.A.1.1.3
STP Rep_950_c_24 Rep_950_c_24_240 238669 239841 + Aminotran_1_2
pfam Rep_950_c_24 Rep_950_c_24_241 240729 241709 - DDE_Tnp_1 | DUF772
TC Rep_950_c_24 Rep_950_c_24_242 242661 244142 + 2.A.40.4.3
TC Rep_950_c_24 Rep_950_c_24_243 244211 246175 - 5.A.3.11.1
TC Rep_950_c_24 Rep_950_c_24_244 246479 247741 - 2.A.41.2.9
pfam Rep_950_c_24 Rep_950_c_24_245 247871 248803 - Indigoidine_A
TF Rep_950_c_24 Rep_950_c_24_246 248800 249891 - HTH_11
TC Rep_950_c_24 Rep_950_c_24_247 250461 251105 - 3.A.1.15.3
Gene ID: Rep_950_c_24_229
Type: TC
Location: 228178 - 228432 (+)
Gene ID: Rep_950_c_24_230
Type: TF
Location: 228547 - 229356 (-)
Gene ID: Rep_950_c_24_231
Type: pfam
Location: 229616 - 230938 (+)
Gene ID: Rep_950_c_24_232
Type: TC
Location: 230920 - 231393 (+)
Gene ID: Rep_950_c_24_233
Type: TC
Location: 231404 - 232183 (+)
Gene ID: Rep_950_c_24_234
Type: TC
Location: 232173 - 233048 (+)
Gene ID: Rep_950_c_24_235
Type: TC
Location: 233064 - 233498 (+)
Gene ID: Rep_950_c_24_236
Type: CAZyme
Location: 233495 - 234634 (+)
Gene ID: Rep_950_c_24_237
Type: STP
Location: 234918 - 236084 (+)
Gene ID: Rep_950_c_24_238
Type: pfam
Location: 236087 - 236944 (+)
Gene ID: Rep_950_c_24_239
Type: TC
Location: 237085 - 238656 (+)
Gene ID: Rep_950_c_24_240
Type: STP
Location: 238669 - 239841 (+)
Gene ID: Rep_950_c_24_241
Type: pfam
Location: 240729 - 241709 (-)
Gene ID: Rep_950_c_24_242
Type: TC
Location: 242661 - 244142 (+)
Gene ID: Rep_950_c_24_243
Type: TC
Location: 244211 - 246175 (-)
Gene ID: Rep_950_c_24_244
Type: TC
Location: 246479 - 247741 (-)
Gene ID: Rep_950_c_24_245
Type: pfam
Location: 247871 - 248803 (-)
Gene ID: Rep_950_c_24_246
Type: TF
Location: 248800 - 249891 (-)
Gene ID: Rep_950_c_24_247
Type: TC
Location: 250461 - 251105 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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