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Cluster: Rep_950_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_950_c_2 Rep_950_c_2_52 42529 43296 + 3.A.1.3.17
TC Rep_950_c_2 Rep_950_c_2_53 43365 44129 + 3.A.1.3.15
TC Rep_950_c_2 Rep_950_c_2_54 44116 44838 + 3.A.1.3.25
peptidase Rep_950_c_2 Rep_950_c_2_55 44898 46664 - M38.UNW
TC Rep_950_c_2 Rep_950_c_2_56 46886 48220 + 2.A.40.7.6
NULL(UNKNOWN) Rep_950_c_2 Rep_950_c_2_57 48259 48672 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_950_c_2 Rep_950_c_2_58 49055 50599 + Sulfatase
CAZyme Rep_950_c_2 Rep_950_c_2_59 50808 51797 + GT2
NULL(UNKNOWN) Rep_950_c_2 Rep_950_c_2_60 52039 52665 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_950_c_2 Rep_950_c_2_61 53014 54411 + 2.A.3.1.7
TC Rep_950_c_2 Rep_950_c_2_62 54460 55953 - 2.A.21.2.1
Gene ID: Rep_950_c_2_52
Type: TC
Location: 42529 - 43296 (+)
Gene ID: Rep_950_c_2_53
Type: TC
Location: 43365 - 44129 (+)
Gene ID: Rep_950_c_2_54
Type: TC
Location: 44116 - 44838 (+)
Gene ID: Rep_950_c_2_55
Type: peptidase
Location: 44898 - 46664 (-)
Gene ID: Rep_950_c_2_56
Type: TC
Location: 46886 - 48220 (+)
Gene ID: Rep_950_c_2_57
Type:
Location: 48259 - 48672 (-)
Gene ID: Rep_950_c_2_58
Type: pfam
Location: 49055 - 50599 (+)
Gene ID: Rep_950_c_2_59
Type: CAZyme
Location: 50808 - 51797 (+)
Gene ID: Rep_950_c_2_60
Type:
Location: 52039 - 52665 (-)
Gene ID: Rep_950_c_2_61
Type: TC
Location: 53014 - 54411 (+)
Gene ID: Rep_950_c_2_62
Type: TC
Location: 54460 - 55953 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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